Gene_Locus Report

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Gene_locus Report for: borbr-BB1064

Bordetella bronchiseptica (Alcaligenes bronchisepticus) putative hydrolase

Comment
Other strains: Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (Alcaligenes bronchisepticus)


Relationship
Family|6_AlphaBeta_hydrolase
Block| X
Position in NCBI Life Tree|Bordetella bronchiseptica
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Betaproteobacteria: N E > Burkholderiales: N E > Alcaligenaceae: N E > Bordetella: N E > Bordetella bronchiseptica: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : BX640440, CAE31562, WP_003808813
1 UniProt : A0A0H3LJX8
1 UniProt : A0A0H3LJX8
1 Interpro : A0A0H3LJX8
1 Pfam : A0A0H3LJX8
1 PIRSF : A0A0H3LJX8
1 SUPERFAM : A0A0H3LJX8
Sequence
Graphical view for this peptide sequence: borbr-BB1064
Colored MSA for 6_AlphaBeta_hydrolase (raw)
MATAIASDGVRLHYETTGAGTPIVFVHEFAGNLRSWEPQVRHFARQYQCI
RFNARGYPPSEVPESVSAYSQAQAVRDIVAVMDAVGAAKAHVVGLSMGGF
AALHLGLTHPERALSLCVAGAGYGAEPGRRDLFRQESETSARLLLELGMP
AFAERYTQGPTRMPFLRADPLGFAEFVALMKTHSALGSANTQLGVQRERP
SLYELEEQLGRLTVPTLILNGDEDWPCLAPGLMLKRVIPSAALSVIPNCG
HTINLEASEAFNRVLGDFMAQAASGRWPQRDPRAMADTITGMSGGKS
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MATAIASDGVRLHYETTGAGTPIVFVHEFAGNLRSWEPQVRHFARQYQCI
RFNARGYPPSEVPESVSAYSQAQAVRDIVAVMDAVGAAKAHVVGLSMGGF
AALHLGLTHPERALSLCVAGAGYGAEPGRRDLFRQESETSARLLLELGMP
AFAERYTQGPTRMPFLRADPLGFAEFVALMKTHSALGSANTQLGVQRERP
SLYELEEQLGRLTVPTLILNGDEDWPCLAPGLMLKRVIPSAALSVIPNCG
HTINLEASEAFNRVLGDFMAQAASGRWPQRDPRAMADTITGMSGGKS


Reference
    Title: Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica
    Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, Harris DE, Holden MT, Churcher CM, Bentley SD and Maskell DJ <43 more author(s)>
    Ref: Nat Genet, 35:32, 2003 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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