Gene_Locus Report

Biblio print

Add to basket

Go to basket

Tree Display

AceDB Schema

XML Display

Feedback

Gene_locus Report for: borbr-BB1079

Bordetella bronchiseptica (Alcaligenes bronchisepticus) putative hydrolase (EC 3.-.-.-)

Comment
only c-term Pfam Abhydrolase_6 Other strains: Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (Alcaligenes bronchisepticus)


Relationship
Family|6_AlphaBeta_hydrolase
Block| X
Position in NCBI Life Tree|Bordetella bronchiseptica
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Betaproteobacteria: N E > Burkholderiales: N E > Alcaligenaceae: N E > Bordetella: N E > Bordetella bronchiseptica: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : BX640440, CAE31577, WP_003808844
1 UniProt : A0A0H3LJZ6
1 UniProt : A0A0H3LJZ6
1 Interpro : A0A0H3LJZ6
1 Prodom : A0A0H3LJZ6
1 Pfam : A0A0H3LJZ6
1 PIRSF : A0A0H3LJZ6
1 SUPERFAM : A0A0H3LJZ6
Sequence
Graphical view for this peptide sequence: borbr-BB1079
Colored MSA for 6_AlphaBeta_hydrolase (raw)
IQGRYTVHGAGHSPVSPVYWEESGAGAPIVMLHTAGADSRQFRHQLSDVE
VARDWKMYAFDMPGHGRSGMPAGWSDGEAYLLTQQAYLDACVQFLEQVVK
APAIVMGCSMGAAMSLVLGARRPDLVAGVIALEAPWRAPGRRSPLLADAR
VNAGLHNPSYVRALLSPTSPQAYRDEACWIYSQAGFGIYSGDLGFYSNEF
DGELVGRELARTDVPVYLLTGSYDYSASPDNTRKLAALVPQAEFHEMADL
GHFPMSENPDGFRPYWLGALARLRGQMR
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

IQGRYTVHGAGHSPVSPVYWEESGAGAPIVMLHTAGADSRQFRHQLSDVE
VARDWKMYAFDMPGHGRSGMPAGWSDGEAYLLTQQAYLDACVQFLEQVVK
APAIVMGCSMGAAMSLVLGARRPDLVAGVIALEAPWRAPGRRSPLLADAR
VNAGLHNPSYVRALLSPTSPQAYRDEACWIYSQAGFGIYSGDLGFYSNEF
DGELVGRELARTDVPVYLLTGSYDYSASPDNTRKLAALVPQAEFHEMADL
GHFPMSENPDGFRPYWLGALARLRGQMR


Reference
    Title: Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica
    Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, Harris DE, Holden MT, Churcher CM, Bentley SD and Maskell DJ <43 more author(s)>
    Ref: Nat Genet, 35:32, 2003 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer