Gene_Locus Report

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Gene_locus Report for: borpe-q7vzb4

Bordetella pertussis Putative Bordetella bronchiseptica (Alcaligenes bronchisepticus) Bordetella parapertussis uncharacterized protein

Relationship
Family|Duf_3141
Block| X
Position in NCBI Life Tree|Bordetella pertussis
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Betaproteobacteria: N E > Burkholderiales: N E > Alcaligenaceae: N E > Bordetella: N E > Bordetella pertussis: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : BX640414, BX640441, BX640426
2 UniProt : Q7VZB4, Q7WB39
2 UniProt : Q7VZB4, Q7WB39
2 Interpro : Q7VZB4, Q7WB39
2 Pfam : Q7VZB4, Q7WB39
2 PIRSF : Q7VZB4, Q7WB39
2 SUPERFAM : Q7VZB4, Q7WB39
Sequence
Graphical view for this peptide sequence: borpe-q7vzb4
Colored MSA for Duf_3141 (raw)
MAASAADRTAPDRSPAPAAHPAANLWTSAYQYTLDAWQRGILYTDVMRQR
GNQYLTHMAKRAPNVLSMKSELVLDGRKFERPVNYALLRIVPPADAPVDP
QKHPFLVVDPRAGHGPGIGGFKPESEIGVAVRAGHPCYFATFLPHPTDTQ
TVEDVMRAEARFLEEIIALHPQAEGRPVVVGNCQAGWQIMMTAAMRPELF
GPIIVAGAPLSYWAGWRDMNPMRYSGGLLGGSWLTQMTSDLGNGKFDGAW
LVQNFENLNPANTLWSKQYNLYAKVDTEAPRYLEFEKWWGGHVFLNGPEI
QYIVDNLFVGNRLATAGLVTSDGIRIDLRNIRSPIIVFCSKGDNITPPPQ
ALGWITDLYQDDREVVAHNQTIVYAVHESIGHLGIFVSGAVARKEHQEFT
ANIDVIDVLPPGIYQAEIADKTPDTPNADLAYGDYVLSFERRRLDDVREI
VERNEEDDQRFAAVARISDINLGLYRSFVQPWVRAAVTPQSAEWMQRMHP
LRLPYELISDRNPWVAPVAQLAEQVREQRQPAAPDNPFWALQKMASDAIV
AGLDIWRDLRDSACERIFMATYGSPLVQDWAGLGAKDGPPRRHPGVSPEH
RDFMAARAAELRAQIDQGGLREAGLRMLLYVSGAEGGVDERSFAMIRKMR
ADTDAKLSLQAFKDATRDQALMMQLDGPAAIRAIPKLLENASAADIRATL
HGITHVLEAAGPLSDRARASLDEMKRLFQGAERRAVKRADAPAPARKAAA
RKTATGKAATGKTAARPAGRKAAATPRKGRTA
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MAASAADRTAPDRSPAPAAHPAANLWTSAYQYTLDAWQRGILYTDVMRQR
GNQYLTHMAKRAPNVLSMKSELVLDGRKFERPVNYALLRIVPPADAPVDP
QKHPFLVVDPRAGHGPGIGGFKPESEIGVAVRAGHPCYFATFLPHPTDTQ
TVEDVMRAEARFLEEIIALHPQAEGRPVVVGNCQAGWQIMMTAAMRPELF
GPIIVAGAPLSYWAGWRDMNPMRYSGGLLGGSWLTQMTSDLGNGKFDGAW
LVQNFENLNPANTLWSKQYNLYAKVDTEAPRYLEFEKWWGGHVFLNGPEI
QYIVDNLFVGNRLATAGLVTSDGIRIDLRNIRSPIIVFCSKGDNITPPPQ
ALGWITDLYQDDREVVAHNQTIVYAVHESIGHLGIFVSGAVARKEHQEFT
ANIDVIDVLPPGIYQAEIADKTPDTPNADLAYGDYVLSFERRRLDDVREI
VERNEEDDQRFAAVARISDINLGLYRSFVQPWVRAAVTPQSAEWMQRMHP
LRLPYELISDRNPWVAPVAQLAEQVREQRQPAAPDNPFWALQKMASDAIV
AGLDIWRDLRDSACERIFMATYGSPLVQDWAGLGAKDGPPRRHPGVSPEH
RDFMAARAAELRAQIDQGGLREAGLRMLLYVSGAEGGVDERSFAMIRKMR
ADTDAKLSLQAFKDATRDQALMMQLDGPAAIRAIPKLLENASAADIRATL
HGITHVLEAAGPLSDRARASLDEMKRLFQGAERRAVKRADAPAPARKAAA
RKTATGKAATGKTAARPAGRKAAATPRKGRTA


Reference
    Title: Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica
    Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, Harris DE, Holden MT, Churcher CM, Bentley SD and Maskell DJ <43 more author(s)>
    Ref: Nat Genet, 35:32, 2003 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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