Gene_Locus Report

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Gene_locus Report for: brafl-c3y8k5

Branchiostoma floridae (Florida lancelet) (Amphioxus) Putative uncharacterized protein old b6lf84 b6lf83 b6lf82 b6lf81 new c3y8k5 c3y8k3

Comment
these 4 draft genes seem to be only one mixed up here b6lf84 concatened to b6lf81


Relationship
Family|Cholinesterase-like
Block| C
Position in NCBI Life Tree|Branchiostoma floridae
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Cephalochordata: N E > Branchiostomidae: N E > Branchiostoma: N E > Branchiostoma floridae: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : GG666491, DS986718, DS987439
>3 UniProt links 2 more: C3Y8K5, C3Y8K3, C3Y8K2
>3 UniProt links 1 more: C3Y8K5, C3Y8K3, C3Y8K2
>3 Interpro links 1 more: C3Y8K5, C3Y8K3, C3Y8K2
>3 Pfam links 1 more: C3Y8K5, C3Y8K3, C3Y8K2
>3 PIRSF links 1 more: C3Y8K5, C3Y8K3, C3Y8K2
>3 SUPERFAM links 1 more: C3Y8K5, C3Y8K3, C3Y8K2
>3 JGI Amphioxus gene links 2 more: 119243, 69855, 205028
Sequence
Graphical view for this peptide sequence: brafl-c3y8k5
Colored MSA for Cholinesterase-like (raw)
MESAWLFSLLFILFSTPGKADGIVPQLQDGPMAKTQFGPVKGIYTDEAAI
FFGLPFGMPPVGDMYMRWKPPQPFNTPWSPQTYNATVPRPGCWQTTCEFL
PDVRQEFGCPRDNKFSEDCLHLNIFTPLPFNPTEKLPVALWFPGKRYRYG
AATDLVLDGRFLANKTRSVVVTTNYRLGALGFLVAGEGEGAATGSYGTLD
QIAAMRWVQSNIESFGGDKDQVTIMGQSSGADSVALHLIAENTEHLFKQA
VMMSIPFISHKTRSEALQLMTCFRAKNASDISRVATKAEPVILNDIIQKY
VEWAPHVDGTIVKTQHLQDTFWNGKFQKKPFIIGFATDDAFPIIYDEWKD
KMTPSLYEEVMLSVFLAKSELVLHEYPPDSSRDQRPKLSRAVTDHFYVCP
TRRVIRAADRFGLSDVWLYRFDKKTPADNKSVHLWAHFDQECYYRICHGS
DVLYLFQTLKLAGLNVTDGEQSTADSMAYYFGNFLHTGDPNNSGWRVSSQ
HQAHPQQSGDVINWPKYNKLNNYVNMKFGGLTTQLELGYRAEKCDFWDKN
FP
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MESAWLFSLLFILFSTPGKADGIVPQLQDGPMAKTQFGPVKGIYTDEAAI
FFGLPFGMPPVGDMYMRWKPPQPFNTPWSPQTYNATVPRPGCWQTTCEFL
PDVRQEFGCPRDNKFSEDCLHLNIFTPLPFNPTEKLPVALWFPGKRYRYG
AATDLVLDGRFLANKTRSVVVTTNYRLGALGFLVAGEGEGAATGSYGTLD
QIAAMRWVQSNIESFGGDKDQVTIMGQSSGADSVALHLIAENTEHLFKQA
VMMSIPFISHKTRSEALQLMTCFRAKNASDISRVATKAEPVILNDIIQKY
VEWAPHVDGTIVKTQHLQDTFWNGKFQKKPFIIGFATDDAFPIIYDEWKD
KMTPSLYEEVMLSVFLAKSELVLHEYPPDSSRDQRPKLSRAVTDHFYVCP
TRRVIRAADRFGLSDVWLYRFDKKTPADNKSVHLWAHFDQECYYRICHGS
DVLYLFQTLKLAGLNVTDGEQSTADSMAYYFGNFLHTGDPNNSGWRVSSQ
HQAHPQQSGDVINWPKYNKLNNYVNMKFGGLTTQLELGYRAEKCDFWDKN
FP


Reference
    Title: The amphioxus genome and the evolution of the chordate karyotype
    Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A and Rokhsar DS <27 more author(s)>
    Ref: Nature, 453:1064, 2008 : PubMed

            


Other Papers


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Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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