Gene_Locus Report

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Gene_locus Report for: brafl-c3yx19

Branchiostoma floridae (Florida lancelet) (Amphioxus) Putative uncharacterized protein

Comment
again a mixed up gene Here C3YX19 C3YX18 (old B6P9D0 B6P9D1)


Relationship
Family|Neuroligin
Block| C
Position in NCBI Life Tree|Branchiostoma floridae
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Cephalochordata: N E > Branchiostomidae: N E > Branchiostoma: N E > Branchiostoma floridae: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : GG666562
2 UniProt : C3YX19, C3YX18
2 UniProt : C3YX19, C3YX18
2 Interpro : C3YX19, C3YX18
2 Pfam : C3YX19, C3YX18
2 PIRSF : C3YX19, C3YX18
2 SUPERFAM : C3YX19, C3YX18
3 JGI Amphioxus gene : 130726, 186783, 122951
Sequence
Graphical view for this peptide sequence: brafl-c3yx19
Colored MSA for Neuroligin (raw)
MKALGALCLFVLVSSCLGEEEDKLKVKTKYGDVHGFEIEAKSGKHVHAWF
GIPYAEPPVGELRFTEARPPKKWEDVRDATQYAADCPQDKDRLEKIMNGT
HAMSEDCLYLNIFAPEDEAGHHHPVIVVFPGAQYDWGTVRAFDGTALAEH
EVVVVTVNYRMGVFGFLSTDDDEALGNYGLLDQIEALKWIQDNIARFGGD
PKHVTLMGNLAGGNLVSLHLISPYSEGLFHGAIISSGGMMSPTAVLLPPY
KAVDIATELAEKLGCSTESTKDIVSCLREKTADELVGTKVTGPAMMGFGA
FAPTIDGPGGVIAAAPRAMLENNQFSKVPIMVGTTDKWGATAIRELKGVE
FGISSDMNTDFRKTFCERYPEGPRSYINDMLNFEYTDFRRLHDPAAIRDN
LIRASADYHINTGMVFQAAAHAAGGGNVWMYEFHHVSQNDPRPSWMGAHG
SDDMVYVFGHSLMSASDSYEFDKTDEEVHHAVVDVVANFARTGFH
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MKALGALCLFVLVSSCLGEEEDKLKVKTKYGDVHGFEIEAKSGKHVHAWF
GIPYAEPPVGELRFTEARPPKKWEDVRDATQYAADCPQDKDRLEKIMNGT
HAMSEDCLYLNIFAPEDEAGHHHPVIVVFPGAQYDWGTVRAFDGTALAEH
EVVVVTVNYRMGVFGFLSTDDDEALGNYGLLDQIEALKWIQDNIARFGGD
PKHVTLMGNLAGGNLVSLHLISPYSEGLFHGAIISSGGMMSPTAVLLPPY
KAVDIATELAEKLGCSTESTKDIVSCLREKTADELVGTKVTGPAMMGFGA
FAPTIDGPGGVIAAAPRAMLENNQFSKVPIMVGTTDKWGATAIRELKGVE
FGISSDMNTDFRKTFCERYPEGPRSYINDMLNFEYTDFRRLHDPAAIRDN
LIRASADYHINTGMVFQAAAHAAGGGNVWMYEFHHVSQNDPRPSWMGAHG
SDDMVYVFGHSLMSASDSYEFDKTDEEVHHAVVDVVANFARTGFH


Reference
    Title: The amphioxus genome and the evolution of the chordate karyotype
    Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A and Rokhsar DS <27 more author(s)>
    Ref: Nature, 453:1064, 2008 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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