Gene_Locus Report

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Gene_locus Report for: brafl-c3zs49

Branchiostoma floridae (Florida lancelet) (Amphioxus) Putative uncharacterized protein

Relationship
Family|Neuroligin
Block| C
Position in NCBI Life Tree|Branchiostoma floridae
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Cephalochordata: N E > Branchiostomidae: N E > Branchiostoma: N E > Branchiostoma floridae: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : GG666670
1 UniProt : C3ZS49
1 UniProt : C3ZS49
1 Interpro : C3ZS49
1 Pfam : C3ZS49
1 PIRSF : C3ZS49
1 SUPERFAM : C3ZS49
1 JGI Amphioxus gene : 249954
Sequence
Graphical view for this peptide sequence: brafl-c3zs49
Colored MSA for Neuroligin (raw)
MGKRITLNKGDNDLVSVDQYLGIRYAEAPLGDSRFRIVPVQDPKWSGTQN
YTAFGAACMQPVRTTSTNMPAWTRQDILTMQTYVQTRSEDCLFLNIYSPV
SRGRWITWQGEHVIGPDGDDTNQPMQNRTVMVFIHGGWWSSGTGAMYDGT
VLASYGKVIVVTFNYRLGVFGFLSTGDGNAMGNAGLWDQIRALEWIKKYI
QYFGGNPNNVVIFGSGSGAACVNLLMMSPEVKTKALFTRGISQSGTAMST
WSISRSGRQYAQTVANAAGCAVNNNTGTMVGCLRVIDGNTLANITRYDPE
KSPYYRAFSPVVDGILIPDDPKKLRDSFPFTTYDYMVGVAESDGFMYVEG
IDSIYDGIDRNRFESVVRSFVQDVFQTRLQEIIDAVTFSYTDWGDRNNDL
KRRKSTVALFTDFFFVVPAIKTVNSHSRNSPTKKTFFYTFQHQSENTSVP
DWTGAIHGEELPFVFGAPIANTQLLSPDGLYSFTSYSKQEAMLSVAIMTY
WTNFAKTGNPNLPETQKEIFLSTKPNKYQGVNWPRYMYERQQYIYMGMKP
RMREYYRAHKLAFWMEWLPSIVKPRTSPTPSIDQYRPGSAICPNFTPTKG
PWKPGPGIAGIGDLFGTQPPQQDHSRELSITIAVGTSLLLINIVVFALLY
YRRDKRKR
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MGKRITLNKGDNDLVSVDQYLGIRYAEAPLGDSRFRIVPVQDPKWSGTQN
YTAFGAACMQPVRTTSTNMPAWTRQDILTMQTYVQTRSEDCLFLNIYSPV
SRGRWITWQGEHVIGPDGDDTNQPMQNRTVMVFIHGGWWSSGTGAMYDGT
VLASYGKVIVVTFNYRLGVFGFLSTGDGNAMGNAGLWDQIRALEWIKKYI
QYFGGNPNNVVIFGSGSGAACVNLLMMSPEVKTKALFTRGISQSGTAMST
WSISRSGRQYAQTVANAAGCAVNNNTGTMVGCLRVIDGNTLANITRYDPE
KSPYYRAFSPVVDGILIPDDPKKLRDSFPFTTYDYMVGVAESDGFMYVEG
IDSIYDGIDRNRFESVVRSFVQDVFQTRLQEIIDAVTFSYTDWGDRNNDL
KRRKSTVALFTDFFFVVPAIKTVNSHSRNSPTKKTFFYTFQHQSENTSVP
DWTGAIHGEELPFVFGAPIANTQLLSPDGLYSFTSYSKQEAMLSVAIMTY
WTNFAKTGNPNLPETQKEIFLSTKPNKYQGVNWPRYMYERQQYIYMGMKP
RMREYYRAHKLAFWMEWLPSIVKPRTSPTPSIDQYRPGSAICPNFTPTKG
PWKPGPGIAGIGDLFGTQPPQQDHSRELSITIAVGTSLLLINIVVFALLY
YRRDKRKR


Reference
    Title: The amphioxus genome and the evolution of the chordate karyotype
    Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A and Rokhsar DS <27 more author(s)>
    Ref: Nature, 453:1064, 2008 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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