Gene_locus Report for: braja-bll6073 Bradyrhizobium japonicum phbc protein
Comment
Bradyrhizobium japonicum (strain USDA 110) Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Alphaproteobacteria: N E > Rhizobiales: N E > Bradyrhizobiaceae: N E > Bradyrhizobium: N E > Bradyrhizobium japonicum: N E 5_AlphaBeta_hydrolase :
braja-BLL1350 Bradyrhizobium japonicum bll1350 protein .
6_AlphaBeta_hydrolase :
braja-BLL0558 Bradyrhizobium japonicum bll0558 protein ,
braja-BLL0839 Bradyrhizobium japonicum bll0839 protein ,
braja-BLL2323 Bradyrhizobium japonicum bll2323 protein ,
braja-BLL2443 Bradyrhizobium japonicum bll2443 protein ,
braja-BLL2527 Bradyrhizobium japonicum bll2527 protein ,
braja-BLL3416 Bradyrhizobium japonicum bll3416 protein ,
braja-BLL3759 Bradyrhizobium japonicum bll3759 protein ,
braja-BLL5588 Bradyrhizobium japonicum bll5588 protein ,
braja-BLL5740 Bradyrhizobium japonicum bll5740 protein ,
braja-BLL6577 Bradyrhizobium japonicum bll6577 protein ,
braja-BLL6974 Bradyrhizobium japonicum bll6974 protein ,
braja-BLL7370 Bradyrhizobium japonicum bll7370 protein ,
braja-BLL7545 Bradyrhizobium japonicum bll7545 protein ,
braja-BLL7692 Bradyrhizobium japonicum bll7692 protein. N-terminal alpha/beta-hydrolase domain and a C-terminal cyclase homology domain ,
braja-BLL8011 Bradyrhizobium japonicum bll8011 protein N-terminal alpha/beta-hydrolase domain and a C-terminal cyclase homology domain ,
braja-BLL8277 Bradyrhizobium japonicum bll8277 protein ,
braja-BLR0711 Bradyrhizobium japonicum blr0711 protein ,
braja-BLR1078 Bradyrhizobium japonicum blr1078 protein ,
braja-BLR2889 Bradyrhizobium japonicum blr2889 protein ,
braja-BLR3322 Bradyrhizobium japonicum blr3322 protein ,
braja-BLR3519 Bradyrhizobium japonicum blr3519 protein ,
braja-BLR3878 Bradyrhizobium japonicum blr3878 protein ,
braja-BLR6083 Bradyrhizobium japonicum blr6083 protein ,
braja-BLR6271 Bradyrhizobium japonicum blr6271 protein ,
braja-BLR6576 Bradyrhizobium japonicum blr6576 protein ,
braja-BLR7068 Bradyrhizobium japonicum blr7068 protein ,
braja-BLR7144 Bradyrhizobium japonicum oxidoreductase ,
braja-BLR7741 Bradyrhizobium japonicum blr7741 protein ,
braja-BLR7809 Bradyrhizobium japonicum blr7809 protein ,
braja-BLR7810 Bradyrhizobium japonicum blr7810 protein .
A85-EsteraseD-FGH :
braja-BLR6186 Bradyrhizobium japonicum esterase d .
ABHD13-BEM46 :
braja-BLL7123 Bradyrhizobium japonicum bll7123 protein .
Abhydrolase_9 :
braja-q89ql9 Bradyrhizobium japonicum; Bradyrhizobium diazoefficiens; Bradyrhizobium diazoefficiens Putative uncharacterized protein bll3105 ,
brajp-a0a0a3yyr1 Bradyrhizobium japonicum Membrane protein .
Aclacinomycin-methylesterase_RdmC :
braja-BLL2884 Bradyrhizobium japonicum bll2884 protein .
AlphaBeta_hydrolase :
braja-BLL0272 Bradyrhizobium japonicum bll0272 protein ,
braja-BLR2879 Bradyrhizobium japonicum blr2879 protein ,
braja-BLR4181 Bradyrhizobium japonicum blr4181 protein ,
braja-BLR5346 Bradyrhizobium japonicum blr5346 protein .
Atu1826-like :
braja-BLL4335 Bradyrhizobium japonicum (elkanii; pachyrhizi; diazoefficiens; yuanmingense; manausense; valentinum; jicamae; lablabi; retamae; liaoningense; neotropicale; canariense; oligotrophicum) Afipia broomeae; bll4335 protein .
Bacterial_esterase :
braja-BLR2261 Bradyrhizobium japonicum blr2261 protein ,
braja-BLR2321 Bradyrhizobium japonicum blr2321 protein .
BD-FAE :
braja-BLL3359 Bradyrhizobium japonicum bll3359 protein ,
braja-BLR4157 Bradyrhizobium japonicum blr4157 protein .
Carboxymethylbutenolide_lactonase :
braja-pcaD Bradyrhizobium japonicum; Bradyrhizobium sp.; Bradyrhizobium diazoefficiens pcaD Beta-ketoadipate enol-lactone hydrolase .
Carboxypeptidase_S10 :
braja-BLL5514 Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) Bradyrhizobium japonicum Bradyrhizobium sp. S23321 bll5514 protein .
Carb_B_Bacteria :
braja-BLL4001 Bradyrhizobium japonicum bll4001 protein ,
braja-bll6463 Bradyrhizobium japonicum; Bradyrhizobium diazoefficiens; bll6463 gene ,
braja-bll6820 Bradyrhizobium japonicum bll6820 gene ,
brajp-g7daf6 Bradyrhizobium japonicum Putative uncharacterized protein ,
brajp-m4ps52 Bradyrhizobium japonicum; Bradyrhizobium sp Type III effector NopAV .
CFTR-inhibitory-factor_Cif :
braja-BLR8188 Bradyrhizobium japonicum blr8188 protein .
Chlorophyllase :
braja-BLL5160 Bradyrhizobium japonicum; Bradyrhizobium diazoefficiens; Bradyrhizobium sp. bll5160 protein ,
braja-BLR6127 Bradyrhizobium japonicum blr6127 protein .
Dienelactone_hydrolase :
braja-BLL0837 Bradyrhizobium japonicum bll0837 protein ,
braja-BLL6841 Bradyrhizobium japonicum bll6841 protein ,
braja-BLL7509 Bradyrhizobium japonicum bll7509 protein ,
braja-BLR2487 Bradyrhizobium japonicum (strain USDA 110) blr2487 protein ,
braja-BLR5359 Bradyrhizobium japonicum blr5359 protein ,
braja-BLR7443 Bradyrhizobium japonicum blr7443 protein .
DPP4N_Peptidase_S9 :
braja-ID587 Bradyrhizobium japonicum id587 (blr1971 protein) .
Duf_900 :
braja-q89c18 Bradyrhizobium japonicum blr7980 protein .
Duf_1100-S :
braja-BLL4985 Bradyrhizobium japonicum (strain USDA 110) bll4985 protein ,
braja-BLL6428 Bradyrhizobium japonicum bll6428 protein ,
braja-BLL6890 Bradyrhizobium japonicum bll6890 protein .
Duf_3141 :
braja-BLL4548 Bradyrhizobium japonicum bll4548 protein ,
braja-BLR3456 Bradyrhizobium japonicum blr3456 protein .
Epoxide_hydrolase :
braja-BLL1234 Bradyrhizobium japonicum (strain USDA 110) bll1234 protein ,
braja-BLL1401 Bradyrhizobium japonicum bll1401 protein ,
braja-BLL3418 Bradyrhizobium japonicum bll3418 protein ,
braja-BLL6264 Bradyrhizobium japonicum (strain USDA 110)bll6264 protein ,
braja-BLL7368 Bradyrhizobium japonicum (strain USDA 110) bll7368 protein ,
braja-BLR0418 Bradyrhizobium japonicum blr0418 protein ,
braja-BLR1197 Bradyrhizobium japonicum blr1197 protein ,
braja-BLR2982 Bradyrhizobium japonicum blr2982 protein ,
braja-BLR7894 Bradyrhizobium japonicum blr7894 protein ,
braja-EPHA Bradyrhizobium japonicum epoxide hydrolase ,
braja-EPHB Bradyrhizobium japonicum putative epoxide hydrolase ephb .
Est-OsmC :
braja-BLL2902 Bradyrhizobium japonicum bll2902 protein. esterase is found in n-term of an OsmC/Ohr family domain .
Esterase_phb :
braja-BLL1128 Bradyrhizobium japonicum bll1128 protein ,
braja-BLL4997 Bradyrhizobium japonicum (strain USDA 110) bll4997 protein ,
braja-BLR0899 Bradyrhizobium japonicum (strain USDA 110) poly(3-hydroxyalkanoate) depolymerase (EC 3.1.1.-) .
Haloacetate_dehalogenase :
braja-BLL7497 Bradyrhizobium japonicum bll7497 protein ,
braja-BLR6965 Bradyrhizobium japonicum blr6965 protein .
Haloalkane_dehalogenase-HLD2 :
braja-dhaa .
Haloperoxidase :
braja-BLR1251 Bradyrhizobium japonicum non-heme haloperoxidase ,
braja-BLR6960 Bradyrhizobium japonicum arylesterase (EC 3.1.1.2) ,
braja-BLR7556 Bradyrhizobium japonicum non-heme haloperoxidase .
HNLyase_Bact :
braja-BLL6614 Bradyrhizobium japonicum bll6614 protein .
Homoserine_transacetylase :
braja-BLR6677 Bradyrhizobium japonicum blr6677 protein ,
braja-METX Bradyrhizobium japonicum homoserine o-acetyltransferase (EC 2.3.1.31) .
Homoserine_transacetylase_like_est :
braja-BLL7862 Bradyrhizobium japonicum bll7862 protein .
Hormone-sensitive_lipase_like :
braja-BLL4189 Bradyrhizobium japonicum (strain USDA 110) bll4189 protein ,
braja-BLL4284 Bradyrhizobium japonicum bll4284 protein ,
braja-BLL4989 Bradyrhizobium japonicum bll4989 protein ,
braja-BLR0230 Bradyrhizobium japonicum (strain USDA 110) blr0230 protein ,
braja-BLR6465 Bradyrhizobium japonicum (strain USDA 110) blr6465 protein ,
braja-BLR7622 Bradyrhizobium japonicum blr7622 protein ,
brajp-a0a0a3xqt2 Bradyrhizobium japonicum Acetyl hydrolase .
LYsophospholipase_carboxylesterase :
braja-BLL3246 Bradyrhizobium japonicum (strain USDA 110) bll3246 protein .
Monoglyceridelipase_lysophospholip :
braja-BLL7506 Bradyrhizobium japonicum bll7506 protein ,
braja-PLDB Bradyrhizobium japonicum lysophospholipase .
NLS3-Tex30 :
braja-BLL0118 Bradyrhizobium japonicum bll0118 protein .
PHA_synth_I :
braja-BLL4360 Bradyrhizobium japonicum poly-3-hydroxybutyrate synthase ,
braja-blr3732 Bradyrhizobium japonicum poly-beta-hydroxybutyrate polymerase PHBC (EC 2.3.1.-) .
PHA_synth_III_C :
braja-BLR2885 Bradyrhizobium japonicum blr2885 protein .
PHB_depolymerase_PhaZ :
braja-BLR0908 Bradyrhizobium japonicum blr0908 protein ,
braja-BLR6703 Bradyrhizobium japonicum blr6703 protein .
PolyAspartate-hydrolase :
braja-q89y23 Bradyrhizobium japonicum Bll0132 protein .
Proline_iminopeptidase :
braja-PIP Bradyrhizobium japonicum proline iminopeptidase .
Prolyl_oligopeptidase_S9 :
braja-BLL0546 Bradyrhizobium japonicum bll0546 protein ,
braja-BLL2387 Bradyrhizobium japonicum bll2387 protein ,
braja-BLL3470 Bradyrhizobium japonicum bll3470 protein .
S9N_PPCE_Peptidase_S9 :
braja-BLL1016 Bradyrhizobium japonicum bll1016 protein .
S9N_PREPL_Peptidase_S9 :
braja-PTRB Bradyrhizobium japonicum protease II .
Tannase :
braja-q89c36 Bradyrhizobium japonicum bll7962 protein ,
braja-q89mj3 Bradyrhizobium japonicum bll4200 protein .
Thioesterase :
braja-BLL6574 Bradyrhizobium japonicum bll6574 protein ,
braja-ID930 Bradyrhizobium japonicum id930 (blr2108 protein) .
UCP037442 :
braja-BLL3777 Bradyrhizobium japonicum bll3777 protein .
Xaa-Pro-like_dom :
braja-BLL6275 Bradyrhizobium japonicum bll6275 protein Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can
retrieve all strain data
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Bradyrhizobium japonicum USDA 6:
N ,
E .
Bradyrhizobium japonicum SEMIA 5079:
N ,
E .
Bradyrhizobium diazoefficiens USDA 110:
N ,
E .
Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: braja-bll6073 Colored MSA for PhaC_cen_dom (raw)
MSVVKVFPRAEEPPAQALPANSAAEAPATIPERIPEKPVVANSLPASEPY
PFDRAFHAVLARFTGGISPVALSLAWLDWSTHLAAAPERRMQMFRNGLRD
TGMLLQAVAHATSQKPWSVIEPQGRDRRFKDPQWETAPFNLLAQAFLLSE
RWWHDATTGVRGVSHANEAVVEFSVRQMLDMLAPSNFAATNPQVLEKAFQ
SGGENFVFGWQNWCSDLMRLLSVSKTAGDEQFVVGKTVAATPGKVVYRND
LIELIQYHPTTAQVRPEPILIVPAWIMKYYILDLSPQNSLVRYLTGQGFT
VFAISWRNPDAKDRDVAFDDYRKLGVMAALDMIGRIMPDRKTHALGYCLG
GTLLSIAAAAMARDGDGRLGTITLLAGQTDFTEAGELTLFINESQVAFLE
DMMWQRGYLDTTQMAGAFQLLRSNELIWSRLSRDYLMGESSQPSDLMAWN
ADATRLPYRMHSEYLRKLFLDNDLAEGRYRVEGRSVSLSDIHAPMFVVGT
LADHVAPWRSVYKIHYQADADVTFLLTNGGHNAGVVAPPDEPWHTYQVMT
KAADAPYVGPDEWLKLAPRVEGSWWPEWAQWLAARSGEPCDPPSIGVGGA
DGLPDAPGDYVHS
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M S V V K V F P R A E E P P A Q A L P A N S A A E A P A T I P E R I P E K P V V A N S L P A S E P Y P F D R A F H A V L A R F T G G I S P V A L S L A W L D W S T H L A A A P E R R M Q M F R N G L R D T G M L L Q A V A H A T S Q K P W S V I E P Q G R D R R F K D P Q W E T A P F N L L A Q A F L L S E R W W H D A T T G V R G V S H A N E A V V E F S V R Q M L D M L A P S N F A A T N P Q V L E K A F Q S G G E N F V F G W Q N W C S D L M R L L S V S K T A G D E Q F V V G K T V A A T P G K V V Y R N D L I E L I Q Y H P T T A Q V R P E P I L I V P A W I M K Y Y I L D L S P Q N S L V R Y L T G Q G F T V F A I S W R N P D A K D R D V A F D D Y R K L G V M A A L D M I G R I M P D R K T H A L G Y C L G G T L L S I A A A A M A R D G D G R L G T I T L L A G Q T D F T E A G E L T L F I N E S Q V A F L E D M M W Q R G Y L D T T Q M A G A F Q L L R S N E L I W S R L S R D Y L M G E S S Q P S D L M A W N A D A T R L P Y R M H S E Y L R K L F L D N D L A E G R Y R V E G R S V S L S D I H A P M F V V G T L A D H V A P W R S V Y K I H Y Q A D A D V T F L L T N G G H N A G V V A P P D E P W H T Y Q V M T K A A D A P Y V G P D E W L K L A P R V E G S W W P E W A Q W L A A R S G E P C D P P S I G V G G A D G L P D A P G D Y V H S
Reference
Title: Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110Kaneko T , Nakamura Y , Sato S , Minamisawa K , Uchiumi T , Sasamoto S , Watanabe A , Idesawa K , Iriguchi M and Tabata S <7 more author(s)> Kaneko T , Nakamura Y , Sato S , Minamisawa K , Uchiumi T , Sasamoto S , Watanabe A , Idesawa K , Iriguchi M , Kawashima K , Kohara M , Matsumoto M , Shimpo S , Tsuruoka H , Wada T , Yamada M , Tabata S (- 7) Ref: DNA Research, 9 :189, 2002 : PubMed Abstract ESTHER: Kaneko_2002_DNA.Res_9_189 PubMedSearch: Kaneko 2002 DNA.Res 9 189 PubMedID: 12597275 Gene_locus related to this paper: braja-BLL0118 ,
braja-BLL0272 ,
braja-BLL0546 ,
braja-BLL0558 ,
braja-BLL0837 ,
braja-BLL0839 ,
braja-BLL1016 ,
braja-BLL1128 ,
braja-BLL1234 ,
braja-BLL1350 ,
braja-BLL1401 ,
braja-BLL2323 ,
braja-BLL2387 ,
braja-BLL2443 ,
braja-BLL2527 ,
braja-BLL2884 ,
braja-BLL2902 ,
braja-BLL3246 ,
braja-BLL3359 ,
braja-BLL3416 ,
braja-BLL3418 ,
braja-BLL3470 ,
braja-BLL3759 ,
braja-BLL3777 ,
braja-BLL4001 ,
braja-BLL4189 ,
braja-BLL4284 ,
braja-BLL4335 ,
braja-BLL4360 ,
braja-BLL4548 ,
braja-BLL4985 ,
braja-BLL4989 ,
braja-BLL4997 ,
braja-BLL5160 ,
braja-BLL5514 ,
braja-BLL5588 ,
braja-BLL5740 ,
braja-bll6073 ,
braja-BLL6264 ,
braja-BLL6275 ,
braja-BLL6428 ,
braja-bll6463 ,
braja-BLL6574 ,
braja-BLL6577 ,
braja-BLL6614 ,
braja-bll6820 ,
braja-BLL6841 ,
braja-BLL6890 ,
braja-BLL6974 ,
braja-BLL7123 ,
braja-BLL7368 ,
braja-BLL7370 ,
braja-BLL7497 ,
braja-BLL7506 ,
braja-BLL7509 ,
braja-BLL7545 ,
braja-BLL7692 ,
braja-BLL7862 ,
braja-BLL8011 ,
braja-BLL8277 ,
braja-BLR0230 ,
braja-BLR0418 ,
braja-BLR0711 ,
braja-BLR0899 ,
braja-BLR0908 ,
braja-BLR1078 ,
braja-BLR1197 ,
braja-BLR1251 ,
braja-BLR2261 ,
braja-BLR2321 ,
braja-BLR2487 ,
braja-BLR2879 ,
braja-BLR2885 ,
braja-BLR2889 ,
braja-BLR2982 ,
braja-BLR3322 ,
braja-BLR3456 ,
braja-BLR3519 ,
braja-blr3732 ,
braja-BLR3878 ,
braja-BLR4157 ,
braja-BLR4181 ,
braja-BLR5346 ,
braja-BLR5359 ,
braja-BLR6083 ,
braja-BLR6127 ,
braja-BLR6186 ,
braja-BLR6271 ,
braja-BLR6465 ,
braja-BLR6576 ,
braja-BLR6677 ,
braja-BLR6703 ,
braja-BLR6960 ,
braja-BLR6965 ,
braja-BLR7068 ,
braja-BLR7144 ,
braja-BLR7443 ,
braja-BLR7556 ,
braja-BLR7622 ,
braja-BLR7741 ,
braja-BLR7809 ,
braja-BLR7810 ,
braja-BLR7894 ,
braja-BLR8188 ,
braja-dhaa ,
braja-EPHA ,
braja-EPHB ,
braja-ID587 ,
braja-ID930 ,
braja-METX ,
braja-pcaD ,
braja-PIP ,
braja-PLDB ,
braja-PTRB ,
braja-q89c18 ,
braja-q89c36 ,
braja-q89mj3 ,
braja-q89ql9 ,
braja-q89y23 Abstract
The complete nucleotide sequence of the genome of a symbiotic bacterium Bradyrhizobium japonicum USDA110 was determined. The genome of B. japonicum was a single circular chromosome 9,105,828 bp in length with an average GC content of 64.1%. No plasmid was detected. The chromosome comprises 8317 potential protein-coding genes, one set of rRNA genes and 50 tRNA genes. Fifty-two percent of the potential protein genes showed sequence similarity to genes of known function and 30% to hypothetical genes. The remaining 18% had no apparent similarity to reported genes. Thirty-four percent of the B. japonicum genes showed significant sequence similarity to those of both Mesorhizobium loti and Sinorhizobium meliloti, while 23% were unique to this species. A presumptive symbiosis island 681 kb in length, which includes a 410-kb symbiotic region previously reported by Gottfert et al., was identified. Six hundred fifty-five putative protein-coding genes were assigned in this region, and the functions of 301 genes, including those related to symbiotic nitrogen fixation and DNA transmission, were deduced. A total of 167 genes for transposases/104 copies of insertion sequences were identified in the genome. It was remarkable that 100 out of 167 transposase genes are located in the presumptive symbiotic island. DNA segments of 4 to 97 kb inserted into tRNA genes were found at 14 locations in the genome, which generates partial duplication of the target tRNA genes. These observations suggest plasticity of the B. japonicum genome, which is probably due to complex genome rearrangements such as horizontal transfer and insertion of various DNA elements, and to homologous recombination.
Other Papers
Bradyrhizobium japonicum; Bradyrhizobium diazoefficiens, haloalkane dehalogenase (EC 3.8.1.5) DhaA DbjA