Gene_Locus Report

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Gene_locus Report for: brana-a0a078cuu0

Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein

Comment
Other strains: Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)


Relationship
Family|Pectinacetylesterase-Notum
Block| X
Position in NCBI Life Tree|Brassica napus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Brassiceae: N E > Brassica: N E > Brassica napus: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : LK031821, LK037384
2 UniProt : A0A078JLS6, M4D0B1
2 UniProt : A0A078JLS6, M4D0B1
2 Interpro : A0A078JLS6, M4D0B1
2 Prodom : A0A078JLS6, M4D0B1
2 Pfam : A0A078JLS6, M4D0B1
2 PIRSF : A0A078JLS6, M4D0B1
2 SUPERFAM : A0A078JLS6, M4D0B1
Sequence
Graphical view for this peptide sequence: brana-a0a078cuu0
Colored MSA for Pectinacetylesterase-Notum (raw)
MSKLFLLGVVVVTGLVLGTEANEYLEFNVTELDRIEELEYGFSKSSSNFN
PLMVGLTLIRGAGAKGAVCLDGTLPGYHLHRGHGSGANSWLIQLEGGGWC
DNIRNCVYRKKSRRGSSNYMEKQIQFTGILSDKAQQNPDFFNWNRVKLRY
CDGGSFSGDSQNKAARLQFRGERIWRAAMDDLKAKGMRYAKQALLSGCSA
GGLAVILRCDEFRNLFPGSTRIKCLSDAGLFLDTPDVSGGHTIRKLYNGV
VQLQGVRNNLPHMCTNHLNPTSCFFPQNLISQMKTPLFIVNAAYDIWQIQ
SSIAPTSADPHGYWHECRLNHGRCNAAQLRFLQGFRNQMLRAVTGFSKSR
KNGLFINSCFAHCQTERQDTWFADDSPVIHKKAVAIAVGDWYFDRAEVKL
IDCPYPCDRSCHNLVFR
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MSKLFLLGVVVVTGLVLGTEANEYLEFNVTELDRIEELEYGFSKSSSNFN
PLMVGLTLIRGAGAKGAVCLDGTLPGYHLHRGHGSGANSWLIQLEGGGWC
DNIRNCVYRKKSRRGSSNYMEKQIQFTGILSDKAQQNPDFFNWNRVKLRY
CDGGSFSGDSQNKAARLQFRGERIWRAAMDDLKAKGMRYAKQALLSGCSA
GGLAVILRCDEFRNLFPGSTRIKCLSDAGLFLDTPDVSGGHTIRKLYNGV
VQLQGVRNNLPHMCTNHLNPTSCFFPQNLISQMKTPLFIVNAAYDIWQIQ
SSIAPTSADPHGYWHECRLNHGRCNAAQLRFLQGFRNQMLRAVTGFSKSR
KNGLFINSCFAHCQTERQDTWFADDSPVIHKKAVAIAVGDWYFDRAEVKL
IDCPYPCDRSCHNLVFR


References
    Title: Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome
    Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C and Wincker P <70 more author(s)>
    Ref: Science, 345:950, 2014 : PubMed

            

    Title: The genome of the mesopolyploid crop species Brassica rapa
    Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I and Zhang Z <88 more author(s)>
    Ref: Nat Genet, 43:1035, 2011 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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