Gene_Locus Report

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Gene_locus Report for: brana-a0a078d7m7

Brassica napus (Rape); Brassica oleracea; Brassica rapa; Uncharacterized protein BnaC07g26220D BnaA06g30570D protein

Comment
Other strains: Brassica napus (Rape); Brassica oleracea var. oleracea; Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)


Relationship
Family|Duf_1350
Block| X
Position in NCBI Life Tree|Brassica napus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Brassiceae: N E > Brassica: N E > Brassica napus: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : XP_013644251
2 UniProt : A0A0D3DBN6, M4F8W3
2 Interpro : A0A0D3DBN6, M4F8W3
2 Pfam : A0A0D3DBN6, M4F8W3
2 PIRSF : A0A0D3DBN6, M4F8W3
2 SUPERFAM : A0A0D3DBN6, M4F8W3
Sequence
Graphical view for this peptide sequence: brana-a0a078d7m7
Colored MSA for Duf_1350 (raw)
MTTCGLWTPPSFSPRRRLCNFSSSRRSPLSVIRFDEERVSRRVFCSDNQE
NTNKDRPQPSGIQVYGEIERLLTETVKQSQSSFAGTADWSEVEGAWVLRP
RNSNPKMVAHFIGGIFVGAAPQLTYRLFLERLAEKDVLVIATPYASGFDH
FAIADEVQFKFDRCCRSLHESVQDLPSFGIGHSLGSLIHLLIGSRYAVQR
NGNVFMAFNNKEASLAIPLFSPVLVPMAQSLGPLLSQVATSPTVRLGAEM
TRKQLETLSPPIMKQILPLVEQLPPLYMDLVKGREDFIPKPEETRRLIRS
YYGISRNLLIKFEDDSIDETPILAQVLGVESSISSKLDMSIRTLPGDHGL
PLQQALPDVPPAMADAVNRGSEFLANMAVGTPWESVAKEVGGTLGMDSKI
LRAYTSKDLAQLVDAITSWMASNMGPKLLRS
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MTTCGLWTPPSFSPRRRLCNFSSSRRSPLSVIRFDEERVSRRVFCSDNQE
NTNKDRPQPSGIQVYGEIERLLTETVKQSQSSFAGTADWSEVEGAWVLRP
RNSNPKMVAHFIGGIFVGAAPQLTYRLFLERLAEKDVLVIATPYASGFDH
FAIADEVQFKFDRCCRSLHESVQDLPSFGIGHSLGSLIHLLIGSRYAVQR
NGNVFMAFNNKEASLAIPLFSPVLVPMAQSLGPLLSQVATSPTVRLGAEM
TRKQLETLSPPIMKQILPLVEQLPPLYMDLVKGREDFIPKPEETRRLIRS
YYGISRNLLIKFEDDSIDETPILAQVLGVESSISSKLDMSIRTLPGDHGL
PLQQALPDVPPAMADAVNRGSEFLANMAVGTPWESVAKEVGGTLGMDSKI
LRAYTSKDLAQLVDAITSWMASNMGPKLLRS



No Reference

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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