Gene_locus Report for: brana-a0a078ild2 Brassica napus (Rape). BnaCnng19750D protein
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Brassiceae: N E > Brassica: N E > Brassica napus: N E 6_AlphaBeta_hydrolase :
brana-kaiye1 Brassica napus (Rape) AB_hydrolase lipase .
ABHD13-BEM46 :
brana-a0a078jxa8 Brassica napus (Rape); Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis); Brassica campestris (Field mustard); Brassica oleracea var. oleracea. BnaAnng32740D protein ,
brana-a0a078i2k3 Brassica napus (Rape); Brassica oleracea var. oleracea; Brassica campestris (Field mustard); Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). BnaA02g04910D protein .
BD-FAE :
brana-a0a078j4a9 Brassica napus (Rape); Brassica oleracea; Brassica rapa. BnaA05g33550D protein .
Bodyguard :
brana-a0a078fg28 Brassica napus (Rape) BnaC06g13770D protein .
Carboxypeptidase_S10 :
brana-q6txd6 Brassica napus (Rape), Brassica oleracea, Brassica rapa, 1-o-sinapoylglucose:choline sinapoyltransferase .
Chlorophyllase_Plant :
brana-a0a078h612 Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein .
Duf_1350 :
brana-a0a078d7m7 Brassica napus (Rape); Brassica oleracea; Brassica rapa; Uncharacterized protein BnaC07g26220D BnaA06g30570D protein ,
brana-a0a078fd70 Brassica napus (Rape); Brassica oleracea; Brassica rapa; Uncharacterized protein .
Epoxide_hydrolase :
brana-SEH1 Brassica napus (Rape) soluble epoxide hydrolase (EC 3.3.2.3) .
Pectinacetylesterase-Notum :
brana-a0a078e1m0 Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). BnaC09g15790D protein ,
brana-a0a078cd75 Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). BnaA03g29230D protein ,
brana-a0a078evd3 Brassica napus (Rape). BnaC05g45920D protein ,
brana-a0a078j4f0 Brassica napus (Rape); Brassica rapa (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein ,
brana-a0a078cta5 Brassica napus (Rape). BnaC07g30530D protein ,
brana-a0a078cus4 Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein ,
brana-a0a078f8c2 Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein ,
brana-a0a078jql1 Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein ,
brana-a0a078dgj3 Brassica napus (Rape); Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein ,
brana-a0a078hw50 Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein ,
brana-a0a078cuu0 Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein ,
brana-a0a078iyl8 Brassica napus (Rape). BnaCnng26950D protein ,
brana-a0a078dfa9 Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein ,
brana-a0a078ic91 Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein ,
brana-a0a078cnf7 Brassica napus (Rape). BnaC08g31990D protein ,
brana-a0a078fh41 Brassica napus (Rape). BnaA09g39640D protein ,
brana-a0a078ca65 Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein ,
brana-a0a078ctc8 Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein ,
brana-a0a078h021 Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein ,
brana-a0a078h0h8 Brassica napus (Rape). BnaCnng06990D protein ,
brana-a0a078jx23 Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein ,
brana-a0a078ci96 Brassica napus (Rape). BnaA08g09180D protein ,
brana-a0a078cqd7 Brassica napus (Rape). BnaA01g09990D protein ,
brana-a0a078dh94 Brassica napus (Rape), Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). Uncharacterized protein .
Plant_carboxylesterase :
brana-e7e1l1 Brassica napus (Rape) Gibberellin receptor 1B .
Plant_lipase_EDS1-like :
brana-a0a078i6d2 Brassica napus (Rape); Brassica oleracea var. oleracea. BnaCnng12090D protein ,
brana-a0a078jku0 Brassica napus (Rape). BnaAnng26220D protein .
Triacylglycerol-lipase-OBL1-like :
brana-a0a078fw53 Brassica napus (Rape). BnaA09g07600D protein ,
brana-a0a078itf3 Brassica napus (Rape). BnaA10g28500D protein ,
brana-a0a078jsn1 Brassica napus (Rape). BnaAnng31610D protein ,
brana-a0a078jrt9 Brassica napus (Rape). BnaAnng30760D protein .
UCP031088 :
brana-a0a078j2t3 Brassica napus (Rape); Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis). BnaA07g39050D protein Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can
retrieve all strain data
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Brassica napus var. napus:
N ,
E .
Brassica oleracea var. oleracea:
N ,
E .
Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: brana-a0a078ild2 Colored MSA for Chlorophyllase_Plant (raw)
MSPSFLFFTLFLIKEMSSSSSANSFEDGKYKTDLLTVGLSSCCWKKPSSS
PTPQSPPKRLLVATPVEEGEYPVVMLLHGYLLYNSFYSQLMLHVSSHGFI
VIAPQLYSIAGPDTMDEIKSTAEIIDWLSVGLNHFLPPQVTPNLSKFALS
GHSRGGKTAFALALKKFGYSSYLKISALIGIDPVDGMGKGKQTPPPVLTY
EPNSFDLDKMPVLVIGSGLGEISPNLLFPPCAPPGVNHRDFYRECQGPAW
HFVAKDYGHLDMLDDDTEGIRGKISHYLCKNGEERRPMRRFVGGSIVAFL
IAYLEGDDSELVKIKDKSHEGVPVEIQEFEFKN
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M S P S F L F F T L F L I K E M S S S S S A N S F E D G K Y K T D L L T V G L S S C C W K K P S S S P T P Q S P P K R L L V A T P V E E G E Y P V V M L L H G Y L L Y N S F Y S Q L M L H V S S H G F I V I A P Q L Y S I A G P D T M D E I K S T A E I I D W L S V G L N H F L P P Q V T P N L S K F A L S G H S R G G K T A F A L A L K K F G Y S S Y L K I S A L I G I D P V D G M G K G K Q T P P P V L T Y E P N S F D L D K M P V L V I G S G L G E I S P N L L F P P C A P P G V N H R D F Y R E C Q G P A W H F V A K D Y G H L D M L D D D T E G I R G K I S H Y L C K N G E E R R P M R R F V G G S I V A F L I A Y L E G D D S E L V K I K D K S H E G V P V E I Q E F E F K N
Reference
Title: Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genomeChalhoub B , Denoeud F , Liu S , Parkin IA , Tang H , Wang X , Chiquet J , Belcram H , Tong C and Wincker P <70 more author(s)> Chalhoub B , Denoeud F , Liu S , Parkin IA , Tang H , Wang X , Chiquet J , Belcram H , Tong C , Samans B , Correa M , Da Silva C , Just J , Falentin C , Koh CS , Le Clainche I , Bernard M , Bento P , Noel B , Labadie K , Alberti A , Charles M , Arnaud D , Guo H , Daviaud C , Alamery S , Jabbari K , Zhao M , Edger PP , Chelaifa H , Tack D , Lassalle G , Mestiri I , Schnel N , Le Paslier MC , Fan G , Renault V , Bayer PE , Golicz AA , Manoli S , Lee TH , Thi VH , Chalabi S , Hu Q , Fan C , Tollenaere R , Lu Y , Battail C , Shen J , Sidebottom CH , Canaguier A , Chauveau A , Berard A , Deniot G , Guan M , Liu Z , Sun F , Lim YP , Lyons E , Town CD , Bancroft I , Meng J , Ma J , Pires JC , King GJ , Brunel D , Delourme R , Renard M , Aury JM , Adams KL , Batley J , Snowdon RJ , Tost J , Edwards D , Zhou Y , Hua W , Sharpe AG , Paterson AH , Guan C , Wincker P (- 70) Ref: Science, 345 :950, 2014 : PubMed Abstract ESTHER: Chalhoub_2014_Science_345_950 PubMedSearch: Chalhoub 2014 Science 345 950 PubMedID: 25146293 Gene_locus related to this paper: braol-Q8GTM3 ,
braol-Q8GTM4 ,
brana-a0a078j4a9 ,
brana-a0a078e1m0 ,
brana-a0a078cd75 ,
brana-a0a078evd3 ,
brana-a0a078j4f0 ,
brana-a0a078cta5 ,
brana-a0a078cus4 ,
brana-a0a078f8c2 ,
brana-a0a078jql1 ,
brana-a0a078dgj3 ,
brana-a0a078hw50 ,
brana-a0a078cuu0 ,
brana-a0a078iyl8 ,
brana-a0a078dfa9 ,
brana-a0a078ic91 ,
brana-a0a078cnf7 ,
brana-a0a078fh41 ,
brana-a0a078ca65 ,
brana-a0a078ctc8 ,
brana-a0a078h021 ,
brana-a0a078h0h8 ,
brana-a0a078jx23 ,
brana-a0a078ci96 ,
brana-a0a078cqd7 ,
brana-a0a078dh94 ,
brana-a0a078h612 ,
brana-a0a078ild2 ,
brana-a0a078j2t3 ,
braol-a0a0d3dpb2 ,
braol-a0a0d3dx76 ,
brana-a0a078jxa8 ,
brana-a0a078i2k3 ,
braol-a0a0d3ef55 ,
brarp-m4dcj8 ,
brana-a0a078fw53 ,
brana-a0a078itf3 ,
brana-a0a078jsn1 ,
brana-a0a078jrt9 ,
brana-a0a078i6d2 ,
brana-a0a078jku0 Abstract
Oilseed rape (Brassica napus L.) was formed ~7500 years ago by hybridization between B. rapa and B. oleracea, followed by chromosome doubling, a process known as allopolyploidy. Together with more ancient polyploidizations, this conferred an aggregate 72x genome multiplication since the origin of angiosperms and high gene content. We examined the B. napus genome and the consequences of its recent duplication. The constituent An and Cn subgenomes are engaged in subtle structural, functional, and epigenetic cross-talk, with abundant homeologous exchanges. Incipient gene loss and expression divergence have begun. Selection in B. napus oilseed types has accelerated the loss of glucosinolate genes, while preserving expansion of oil biosynthesis genes. These processes provide insights into allopolyploid evolution and its relationship with crop domestication and improvement.
Other Papers
