(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) > cellular organisms: NE > Eukaryota: NE > Opisthokonta: NE > Metazoa: NE > Eumetazoa: NE > Bilateria: NE > Deuterostomia: NE > Chordata: NE > Craniata: NE > Vertebrata: NE > Gnathostomata: NE > Teleostomi: NE > Euteleostomi: NE > Sarcopterygii: NE > Dipnotetrapodomorpha: NE > Tetrapoda: NE > Amniota: NE > Mammalia: NE > Theria: NE > Eutheria: NE > Boreoeutheria: NE > Euarchontoglires: NE > Glires: NE > Rodentia: NE > Hystricomorpha: NE > Caviidae: NE > Cavia: NE > Cavia porcellus: NE
LegendThis sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA MLLLWILSLFLETVAGGEVCFDRLGCFSDNKPWAGTSERPRKGLPWDPSA INVRFLLYTNENPNNYQRITADSSVIRSSDFKTDRKTRFIIHGFIDKGEE NWLADLCKALFQVESVNCICVDWRGGSRTLYSQASQNIQVVGAEVAYLIN FLQSQLDYPPSSVHIIGHSLGSHAAGEAGRRTNGAIGRITGLDPAEPYFQ YTPEIVRLDPSDAQFVDVIHTDGNPIIPNLGFGMSQTVGHLDFFPNGGLQ MPGCQKNILSQIVDIDGIWEGTRDFAACNHLRSYKYYIDSITNPKGFAGF SCDSYSSFSSNKCFPCATGECPQMGHYADKFPGKTKENFQNFYLNTGDKS NFSRWRYRIAVTLSGQKVTGHVLVSLFGDAGNTKQYEIYRGSLKPGNNHS NEIDSDVDVGDLQKVKFIWYNNVINITLPKVGASRITVTRSDGRVFDFCS QDTVREEVLLTLQPC
The comparison of related genomes has emerged as a powerful lens for genome interpretation. Here we report the sequencing and comparative analysis of 29 eutherian genomes. We confirm that at least 5.5% of the human genome has undergone purifying selection, and locate constrained elements covering approximately 4.2% of the genome. We use evolutionary signatures and comparisons with experimental data sets to suggest candidate functions for approximately 60% of constrained bases. These elements reveal a small number of new coding exons, candidate stop codon readthrough events and over 10,000 regions of overlapping synonymous constraint within protein-coding exons. We find 220 candidate RNA structural families, and nearly a million elements overlapping potential promoter, enhancer and insulator regions. We report specific amino acid residues that have undergone positive selection, 280,000 non-coding elements exapted from mobile elements and more than 1,000 primate- and human-accelerated elements. Overlap with disease-associated variants indicates that our findings will be relevant for studies of human biology, health and disease.
Title: Cloning of the classical guinea pig pancreatic lipase and comparison with the lipase related protein 2 Carriere F, Thirstrup K, Hjorth S, Boel E Ref: FEBS Letters, 338:63, 1994 : PubMed
Starting from total pancreatic mRNAs, the classical guinea pig pancreatic lipase was cloned using rapid amplification of 3' and 5' cDNA ends. Internal oligonucleotide primers were designed from a partial cDNA clone including the region coding for the lid domain. Using this strategy, we did not amplify the cDNA corresponding to the pancreatic lipase related protein 2 in which the lid domain is deleted. Amino acid sequences of the classical guinea pig pancreatic lipase and the related protein 2 were compared based on the primary and tertiary structures of the classical human pancreatic lipase. Their distinct physiological roles are discussed in the light of functional amino acid differences.
Cavia porcellus (Guinea pig) phospolipase [PLRP2 like]