Gene_Locus Report

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Gene_locus Report for: celju-b3pcu6

Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp. cellulosa). Conserved domain protein

Relationship
Family|VirJ
Block| X
Position in NCBI Life Tree|Cellvibrio japonicus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Cellvibrionales: N E > Cellvibrionaceae: N E > Cellvibrio: N E > Cellvibrio japonicus: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : CP000934, WP_012486946
1 UniProt : B3PCU6
1 UniProt : B3PCU6
1 Interpro : B3PCU6
1 Prodom : B3PCU6
1 Pfam : B3PCU6
1 PIRSF : B3PCU6
1 SUPERFAM : B3PCU6
Sequence
Graphical view for this peptide sequence: celju-b3pcu6
Colored MSA for VirJ (raw)
MSQHGNLSAVLNIDNYLSNIKARGATCFDAATPLSVYAQDIQQHHQFTHF
TQAFITGFGTAGSYLFAMLTQIPKGIFRGAYSLGWQDDITLPIPPCHNNS
ALEWKERCSELILHTYPLPSTPWRLFNTHPLKDLQAAIDYYTQAWAKSEL
LLIGFSMGADVMPFMVNRLDANTKHKIRSVNLLNPANTVDFVFHVSGWFS
TAGELPYKLYPEMKDWTQWPVNCFYSETQDSLCETIKANLPQKPDNQQLF
YLSGDHHFNGNYQQLIKWILANSKVPVR
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MSQHGNLSAVLNIDNYLSNIKARGATCFDAATPLSVYAQDIQQHHQFTHF
TQAFITGFGTAGSYLFAMLTQIPKGIFRGAYSLGWQDDITLPIPPCHNNS
ALEWKERCSELILHTYPLPSTPWRLFNTHPLKDLQAAIDYYTQAWAKSEL
LLIGFSMGADVMPFMVNRLDANTKHKIRSVNLLNPANTVDFVFHVSGWFS
TAGELPYKLYPEMKDWTQWPVNCFYSETQDSLCETIKANLPQKPDNQQLF
YLSGDHHFNGNYQQLIKWILANSKVPVR


Reference
    Title: Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus
    DeBoy RT, Mongodin EF, Fouts DE, Tailford LE, Khouri H, Emerson JB, Mohamoud Y, Watkins K, Henrissat B and Nelson KE <1 more author(s)>
    Ref: Journal of Bacteriology, 190:5455, 2008 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
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