chick-NLGN3

 
Gallus gallus (Chicken) Neuroligin 3

Relationship
Family Neuroligin
Block C
Gallus gallus position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Sarcopterygii: N E > Dipnotetrapodomorpha: N E > Tetrapoda: N E > Amniota: N E > Sauropsida: N E > Sauria: N E > Archelosauria: N E > Archosauria: N E > Dinosauria: N E > Saurischia: N E > Theropoda: N E > Coelurosauria: N E > Aves: N E > Neognathae: N E > Galloanserae: N E > Galliformes: N E > Phasianidae: N E > Phasianinae: N E > Gallus: N E > Gallus gallus: N E

Molecular evidence
Database
No mutation
No structure
No kinetic



>3 Genbank links 2 more: GU080341, GU080342, GU574581
>3 UniProt links 4 more: D3WGL2, D3WGL3, E9KFA0
>3 UniProtTrembl links 4 more: D3WGL2, D3WGL3, E9KFA0
>3 Interpro links 4 more: D3WGL2, D3WGL3, E9KFA0
>3 Prodom links 4 more: D3WGL2, D3WGL3, E9KFA0
>3 Pfam links 4 more: D3WGL2, D3WGL3, E9KFA0
>3 PIRSF links 4 more: D3WGL2, D3WGL3, E9KFA0
>3 SUPERFAM links 4 more: D3WGL2, D3WGL3, E9KFA0
>3 QuickSwissBlast links 4 more: D3WGL2, D3WGL3, E9KFA0
 
Sequence
Graphical view for this peptide sequence: chick-NLGN3
Colored MSA for Neuroligin (raw)
MWLILWRSPLLPPVLQVPELVAGWDLRLALWVLSFASAVVRMEGQVYSPT
VNTHYGKLRGVRVPLPSEILGPVDQYLGVPYAAPPVGEKRFMPPEPPPSW
SGIRNATHFSPVCPQNIHNAVPEIMLPIWFTSNLDIVATYIQDPNEDCLY
LNIYIPTEDVKRISKECTRKPNKKICRKGGASAKKQGEDLADNDGDEDED
IRDSGAKPVMVYIHGGSYMEGTGNMIDGSVLASYGNVIVITLNYRVGVLG
FLSTGDQAAKGNYGLLDQIQALRWVSENIAFFGGDPLRITVFGSGIGASC
VSLLTLSHHSEGLFQRAIIQSGSALSSWAVNYQPVKYTSMLADKVGCNVL
DTVDMVDCLRQKSAKELVEQDIQPARYHVAFGPVIDGDVIPDDPEILMEQ
GEFLNYDIMLGVNQGEGLKFVEGVVDPEDGVSGSDFDYSVSNFVDNLYGY
PEGKDTLRETIKFMYTDWADRDNPETRRKTLVALFTDHQWVEPSVVTADL
HARYGSPTYFYAFYHHCQSLMKPAWSDAAHGDEVPYVFGIPMIGPTDLFP
CNFSKNDVMLSAVVMTYWTNFAKTGDPNKPVPQDTKFIHTKANRFEEVAW
SKYNPRDQLYLHIGLKPRVRDHYRATKVAFWKHLVPHLYNLHDMFHYTST
TTKVPPPDTTQNSHITRRPNGKIWTTKRPAISPAYNSENGKEKWSPEQEA
GTLLESPRDYSTELSVTIAVGASLLFLNVLAFAALYYRKDKRRQDTHRQP
SPQRGAANDIAHAPDEEMPSLQAGQAHHECEAVPPHDTLRLAALPDYTLT
LRRSPDDIPLMTPNTITMIPNSLVGLQTLHPYNTFAAGFNSTGLPHSHST
TRV
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MWLILWRSPLLPPVLQVPELVAGWDLRLALWVLSFASAVVRMEGQVYSPT
VNTHYGKLRGVRVPLPSEILGPVDQYLGVPYAAPPVGEKRFMPPEPPPSW
SGIRNATHFSPVCPQNIHNAVPEIMLPIWFTSNLDIVATYIQDPNEDCLY
LNIYIPTEDVKRISKECTRKPNKKICRKGGASAKKQGEDLADNDGDEDED
IRDSGAKPVMVYIHGGSYMEGTGNMIDGSVLASYGNVIVITLNYRVGVLG
FLSTGDQAAKGNYGLLDQIQALRWVSENIAFFGGDPLRITVFGSGIGASC
VSLLTLSHHSEGLFQRAIIQSGSALSSWAVNYQPVKYTSMLADKVGCNVL
DTVDMVDCLRQKSAKELVEQDIQPARYHVAFGPVIDGDVIPDDPEILMEQ
GEFLNYDIMLGVNQGEGLKFVEGVVDPEDGVSGSDFDYSVSNFVDNLYGY
PEGKDTLRETIKFMYTDWADRDNPETRRKTLVALFTDHQWVEPSVVTADL
HARYGSPTYFYAFYHHCQSLMKPAWSDAAHGDEVPYVFGIPMIGPTDLFP
CNFSKNDVMLSAVVMTYWTNFAKTGDPNKPVPQDTKFIHTKANRFEEVAW
SKYNPRDQLYLHIGLKPRVRDHYRATKVAFWKHLVPHLYNLHDMFHYTST
TTKVPPPDTTQNSHITRRPNGKIWTTKRPAISPAYNSENGKEKWSPEQEA
GTLLESPRDYSTELSVTIAVGASLLFLNVLAFAALYYRKDKRRQDTHRQP
SPQRGAANDIAHAPDEEMPSLQAGQAHHECEAVPPHDTLRLAALPDYTLT
LRRSPDDIPLMTPNTITMIPNSLVGLQTLHPYNTFAAGFNSTGLPHSHST
TRV

no DNA




References
    Title: Characterization of the neuroligin gene family expression and evolution in zebrafish
    Rissone A, Sangiorgio L, Monopoli M, Beltrame M, Zucchi I, Bussolino F, Arese M, Cotelli F
    Ref: Developmental Dynamics, 239:688, 2010 : PubMed

            

    Title: Alternative splicing of neuroligin and its protein distribution in the outer plexiform layer of the chicken retina
    Wahlin KJ, Hackler L, Jr., Adler R, Zack DJ
    Ref: Journal of Comparative Neurology, 518:4938, 2010 : PubMed

            

    Title: Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    Hillier LW, Miller W, Birney E, Warren W, Hardison RC, Ponting CP, Bork P, Burt DW, Groenen MA and Wilson RK <164 more author(s)>
    Ref: Nature, 432:695, 2004 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
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