Gene_Locus Report

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Gene_locus Report for: chrvi-PHAC

Chromobacterium violaceum (pha synthase) polyhydroxyalkanoate synthase

Relationship
Family|PHA_synth_I
Block| X
Position in NCBI Life Tree|Chromobacterium violaceum
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Betaproteobacteria: N E > Neisseriales: N E > Chromobacteriaceae: N E > Chromobacterium group: N E > Chromobacterium: N E > Chromobacterium violaceum: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AF061446, AE016919
1 UniProt : Q9ZHI2
1 UniProt : Q9ZHI2
1 Interpro : Q9ZHI2
1 Prodom : Q9ZHI2
1 Pfam : Q9ZHI2
1 PIRSF : Q9ZHI2
1 SUPERFAM : Q9ZHI2
Sequence
Graphical view for this peptide sequence: chrvi-PHAC
Colored MSA for PHA_synth_I (raw)
MQQFVNSLSQPPAPDGAAHPFAGAWAQLMNQTNQLFALQSSLYQQQLNLW
SQFLGQAAGQEAAAEAGAKPADRRFASPEWNEHPFYNFLKQSYLQTSKWM
MELVDKTQLDEDAKDKLAFATRQYLDAMSPSNFMLTNPDVVKRAIETKGE
SLVEGMKNMLDDFQKGHISMSDESKFEIGKNLVVTPGQVVFRNELIELIQ
YTPTTDKVYEKPLLFVPPCINKYYLMDLQPDNSMVRHFVAQGYRVFLISW
RSAVAEMKHFTWETYIEKGVFAAAEAVQKITKQPTMNVLGFCVGGVILTT
ALCVAQAKGLKYFDSATFMTSLIDHAEPGEISFFIDESVVAGREAKMASG
GIISGKEIGRTFASLRANDLVWNYVVNNYLLGKTPAPFDLLFWNNDAVDL
PLPMHTFLLRQFYMNNALVRPGAITLCGVPIDIAKIDVPVYMFAARDDHI
VLWSSAFSGLKYLQGAPSRRFVLGASGHIAGSINPVTKDKRNYWANDTLP
LHAEEWLESAESRPGSWWKDWDAWLAPQSGKQVAAPKSLGNKEFPPLLAA
PGSYVLAKAMPSVAASLQ
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MQQFVNSLSQPPAPDGAAHPFAGAWAQLMNQTNQLFALQSSLYQQQLNLW
SQFLGQAAGQEAAAEAGAKPADRRFASPEWNEHPFYNFLKQSYLQTSKWM
MELVDKTQLDEDAKDKLAFATRQYLDAMSPSNFMLTNPDVVKRAIETKGE
SLVEGMKNMLDDFQKGHISMSDESKFEIGKNLVVTPGQVVFRNELIELIQ
YTPTTDKVYEKPLLFVPPCINKYYLMDLQPDNSMVRHFVAQGYRVFLISW
RSAVAEMKHFTWETYIEKGVFAAAEAVQKITKQPTMNVLGFCVGGVILTT
ALCVAQAKGLKYFDSATFMTSLIDHAEPGEISFFIDESVVAGREAKMASG
GIISGKEIGRTFASLRANDLVWNYVVNNYLLGKTPAPFDLLFWNNDAVDL
PLPMHTFLLRQFYMNNALVRPGAITLCGVPIDIAKIDVPVYMFAARDDHI
VLWSSAFSGLKYLQGAPSRRFVLGASGHIAGSINPVTKDKRNYWANDTLP
LHAEEWLESAESRPGSWWKDWDAWLAPQSGKQVAAPKSLGNKEFPPLLAA
PGSYVLAKAMPSVAASLQ


References
    Title: The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability
    Ribeiro de Vasconcelos AT, Brazilian National Genome Project Consortium
    Ref: Proceedings of the National Academy of Sciences of the United States of America, 100:11660, 2003 : PubMed

            

    Title: Cloning, molecular analysis, and expression of the polyhydroxyalkanoic acid synthase (phaC) gene from Chromobacterium violaceum
    Kolibachuk D, Miller A, Dennis D
    Ref: Applied Environmental Microbiology, 65:3561, 1999 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
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