Gene_Locus Report

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Gene_locus Report for: citcl-v4syg1

Citrus clementina (Clementine) (Citrus deliciosa x Citrus sinensis); Citrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu); Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). Uncharacterized protein

Comment
Other strains: Citrus clementina (Clementine) (Citrus deliciosa x Citrus sinensis); Citrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu); Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)


Relationship
Family|Plant_lipase_EDS1-like
Block| L
Position in NCBI Life Tree|Citrus clementina
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Sapindales: N E > Rutaceae: N E > Aurantioideae: N E > Citrus: N E > Citrus clementina: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
Sequence
Graphical view for this peptide sequence: citcl-v4syg1
Colored MSA for Plant_lipase_EDS1-like (raw)
LGEVISMKEEVIKNACSIAMKAHKLPEKQLYLVEKNRGSSDVIFSFPGSW
TISDWFSRSPFGEKMIDPHPPQFASLRSIGNDQVATVNEAFLTRFQAILP
QLQSEVVKAVADRKQIVFTGHSSAGPIAVLMTVWFLENWENFIKSDPSTS
RMPPICVTFGSPLVGDFIINHALRRESWSHYFIHFVMRYDIVPRVLLAPL
SSLEPELKTILDFLNPKCTIHIQEPTREASALYVTVMRNASSVASHAACH
LMGNTNKLSDTLLSFIELSPYRPFGTYVFCTGDRELVVMKNPDAVLQILF
YSSQLSSEVEGPEIALRSVKDHFNYQSELQNLETKGVAHFDNLEGLPLSS
NVGAAGLGLVLNNLGLSTRARLCLCAAGELEKQKRRNQDKINKKKTDIEK
GLLALEGYKTRCEAGRVSYYDALKLSKDTDDFNANVRRLELAGIFDEIME
MLKRYELPDEFEGHREWINIGTRYRRIVEPLDIANYYRHLKNEDTGPYMK
RGRPKRYRYTQRWLEYALKISAGSSGESCFWARIEDLCLRTINMGLFEDV
KEEILSLEKQVEKWVQNRELGDDIFFEDSTFVKWWKKLPQQHRSGSCISK
FINN
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

LGEVISMKEEVIKNACSIAMKAHKLPEKQLYLVEKNRGSSDVIFSFPGSW
TISDWFSRSPFGEKMIDPHPPQFASLRSIGNDQVATVNEAFLTRFQAILP
QLQSEVVKAVADRKQIVFTGHSSAGPIAVLMTVWFLENWENFIKSDPSTS
RMPPICVTFGSPLVGDFIINHALRRESWSHYFIHFVMRYDIVPRVLLAPL
SSLEPELKTILDFLNPKCTIHIQEPTREASALYVTVMRNASSVASHAACH
LMGNTNKLSDTLLSFIELSPYRPFGTYVFCTGDRELVVMKNPDAVLQILF
YSSQLSSEVEGPEIALRSVKDHFNYQSELQNLETKGVAHFDNLEGLPLSS
NVGAAGLGLVLNNLGLSTRARLCLCAAGELEKQKRRNQDKINKKKTDIEK
GLLALEGYKTRCEAGRVSYYDALKLSKDTDDFNANVRRLELAGIFDEIME
MLKRYELPDEFEGHREWINIGTRYRRIVEPLDIANYYRHLKNEDTGPYMK
RGRPKRYRYTQRWLEYALKISAGSSGESCFWARIEDLCLRTINMGLFEDV
KEEILSLEKQVEKWVQNRELGDDIFFEDSTFVKWWKKLPQQHRSGSCISK
FINN


Reference
    Title: Draft Sequencing of the Heterozygous Diploid Genome of Satsuma (Citrus unshiu Marc.) Using a Hybrid Assembly Approach
    Shimizu T, Tanizawa Y, Mochizuki T, Nagasaki H, Yoshioka T, Toyoda A, Fujiyama A, Kaminuma E, Nakamura Y
    Ref: Front Genet, 8:180, 2017 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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