Gene_locus Report for: colp3-q47vk3 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) Putative uncharacterized protein
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Alteromonadales: N E > Colwelliaceae: N E > Colwellia: N E > Colwellia psychrerythraea: N E 6_AlphaBeta_hydrolase :
colp3-q47wr2 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) hypothetical protein ,
colp3-q486t5 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) putative lipase ,
colp3-q488d8 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) hydrolase, alpha/beta hydrolase fold family .
A85-EsteraseD-FGH :
colp3-q488e7 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)putative esterase .
A85-IroE-IroD-Fes-Yiel :
colp3-q47uc4 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibri psychrerythus) putative esterase ,
colp3-q47ye2 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibri psychroerythus) putative esterase .
ABHD11-Acetyl_transferase :
colp3-q485e4 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) hydrolase, alpha/beta fold family .
abh_upf00227 :
colp3-q47wj4 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) hypothetical protein .
ACPH_Peptidase_S9 :
colp3-q47uc7 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) hypothetical protein ,
colp3-q485t4 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)hypothetical protein .
AlphaBeta_hydrolase :
colp3-q48aj8 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)hydrolase, alpha/beta fold family .
Bacterial_lip_FamI.8 :
colps-a0a099l3w2 Colwellia psychrerythraea (Vibrio psychroerythus); Colwellia marinimaniae; Colwellia sp. Uncharacterized protein ,
colp3-q48an1 Colwellia psychrerythraea (Vibrio psychroerythus); Colwellia sp. Uncharacterized protein .
BioH :
colp3-q48ac9 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) bioh protein .
Carboxypeptidase_S10 :
colp3-q489b1 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibri psychroerythus) serine carboxypeptidase .
Cocaine_esterase :
colp3-q47yv1 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) putative acylase .
Dienelactone_hydrolase :
colp3-q47ut6 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) hypothetical protein ,
colp3-q47x08 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) carboxymethylenebutenolidase family protein ,
colp3-q480e1 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) hypothetical protein .
DPP4N_Peptidase_S9 :
colp3-q47za7 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) putative peptidase ,
colp3-q487b7 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) dipeptidyl peptidase IV (EC 3.4.14.5) .
Est-OsmC :
colp3-q47yq1 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) esterase found in n-term of an OsmC/Ohr family domain .
Haloalkane_dehalogenase-HLD1 :
colp3-q482y8 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) Haloalkane_dehalogenase HLDIII .
Hormone-sensitive_lipase_like :
colp3-q487s5 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) putative lipase .
Hydrolase_RBBP9_YdeN :
colp3-q484d8 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) hypothetical protein .
Lipase_3 :
colp3-q481z4 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) lipase family protein ,
colp3-q484k3 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibri psychroerythus) lipase family protein .
LYsophospholipase_carboxylesterase :
colp3-q47w94 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) putative carboxylesterase .
Monoglyceridelipase_lysophospholip :
colp3-q47vy9 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) lysophospholipase l2 (EC 3.1.1.5) .
NLS3-Tex30 :
colp3-q47ya3 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) Uncharacterized protein .
PHA_synth_I :
colp3-q47ws9 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibroi psychroerythus)poly-beta-hydroxybutyrate polymerase (EC 2.3.1.-) .
PHB_depolymerase_PhaZ :
colp3-q47ws7 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) polyhydroxyalkanoate depolymerase, intracellular (EC 3.1.1.-) .
Proline_iminopeptidase :
colp3-q47x48 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) proline iminopeptidase (EC 3.4.11.5) ,
colp3-q488a3 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) proline iminopeptidase (EC 3.4.11.5) ,
colp3-q488p2 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) hydrolase, alpha/beta hydrolase fold family .
Prolyl_oligopeptidase_S9 :
colp3-q47ut7 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)hypothetical protein ,
colp3-q488d2 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) hypothetical protein .
S9N_PPCE_Peptidase_S9 :
colp3-q48aq9 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) prolyl endopeptidase (EC 3.4.21.26) .
S9N_PREPL_Peptidase_S9 :
colp3-q47v81 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) protease II (EC 3.4.21.83) ,
colp3-q47yd5 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) prolyl oligopeptidase family protein (EC 3.4.21.26) ,
colp3-q47zp5 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)protease II (EC 3.4.21.83) .
UCP037442 :
colp3-q488f8 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) Putative uncharacterized protein ,
colp3-q489i6 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) hypothetical protein Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: colp3-q47vk3 Colored MSA for Duf_3530 (raw)
MRLKSFKEKQLHTTSPHNVSRNKISSIPLVLFICMLTFICSPLTFAEEQK
TDASAENTQKTANKVTPIKKPIELTQQYKEDLKHYLTDEQVKPLLAGPDD
YLTLVKRYTSANGKGVVILLPEWQQGATNPKAINYLRNALPAKGWSTIAI
QPSNKPENYPSTEITVAEQKKENQLVLKEYKSKLNSMLNAVMNTAREYPG
IVLVIAQGNNAALLVDIYSQDDSQQPNALIMLSSYRQSNHALINGVNENF
ARQVASTELPILDLYLKHDNPLVLNKAAQRRAFSKQEMKVYYRQRQLNNT
VTGYYPEEELLSQINSWLKAIGW
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M R L K S F K E K Q L H T T S P H N V S R N K I S S I P L V L F I C M L T F I C S P L T F A E E Q K T D A S A E N T Q K T A N K V T P I K K P I E L T Q Q Y K E D L K H Y L T D E Q V K P L L A G P D D Y L T L V K R Y T S A N G K G V V I L L P E W Q Q G A T N P K A I N Y L R N A L P A K G W S T I A I Q P S N K P E N Y P S T E I T V A E Q K K E N Q L V L K E Y K S K L N S M L N A V M N T A R E Y P G I V L V I A Q G N N A A L L V D I Y S Q D D S Q Q P N A L I M L S S Y R Q S N H A L I N G V N E N F A R Q V A S T E L P I L D L Y L K H D N P L V L N K A A Q R R A F S K Q E M K V Y Y R Q R Q L N N T V T G Y Y P E E E L L S Q I N S W L K A I G W
Reference
Title: The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analysesMethe BA , Nelson KE , Deming JW , Momen B , Melamud E , Zhang X , Moult J , Madupu R , Nelson WC and Fraser CM <17 more author(s)> Methe BA , Nelson KE , Deming JW , Momen B , Melamud E , Zhang X , Moult J , Madupu R , Nelson WC , Dodson RJ , Brinkac LM , Daugherty SC , Durkin AS , DeBoy RT , Kolonay JF , Sullivan SA , Zhou L , Davidsen TM , Wu M , Huston AL , Lewis M , Weaver B , Weidman JF , Khouri H , Utterback TR , Feldblyum TV , Fraser CM (- 17) Ref: Proc Natl Acad Sci U S A, 102 :10913, 2005 : PubMed Abstract ESTHER: Methe_2005_Proc.Natl.Acad.Sci.U.S.A_102_10913 PubMedSearch: Methe 2005 Proc.Natl.Acad.Sci.U.S.A 102 10913 PubMedID: 16043709 Gene_locus related to this paper: colp3-q47uc4 ,
colp3-q47uc7 ,
colp3-q47ut6 ,
colp3-q47ut7 ,
colp3-q47v81 ,
colp3-q47vk3 ,
colp3-q47vy9 ,
colp3-q47w94 ,
colp3-q47wj4 ,
colp3-q47wr2 ,
colp3-q47ws7 ,
colp3-q47ws9 ,
colp3-q47x08 ,
colp3-q47x48 ,
colp3-q47yd5 ,
colp3-q47ye2 ,
colp3-q47yq1 ,
colp3-q47yv1 ,
colp3-q47za7 ,
colp3-q47zp5 ,
colp3-q48ac9 ,
colp3-q48aj8 ,
colp3-q48aq9 ,
colp3-q480e1 ,
colp3-q481z4 ,
colp3-q482y8 ,
colp3-q484d8 ,
colp3-q484k3 ,
colp3-q485e4 ,
colp3-q485t4 ,
colp3-q486t5 ,
colp3-q487b7 ,
colp3-q487s5 ,
colp3-q488a3 ,
colp3-q488d2 ,
colp3-q488d8 ,
colp3-q488e7 ,
colp3-q488f8 ,
colp3-q488p2 ,
colp3-q489b1 ,
colp3-q489i6 ,
colp3-q47ya3 Abstract
The completion of the 5,373,180-bp genome sequence of the marine psychrophilic bacterium Colwellia psychrerythraea 34H, a model for the study of life in permanently cold environments, reveals capabilities important to carbon and nutrient cycling, bioremediation, production of secondary metabolites, and cold-adapted enzymes. From a genomic perspective, cold adaptation is suggested in several broad categories involving changes to the cell membrane fluidity, uptake and synthesis of compounds conferring cryotolerance, and strategies to overcome temperature-dependent barriers to carbon uptake. Modeling of three-dimensional protein homology from bacteria representing a range of optimal growth temperatures suggests changes to proteome composition that may enhance enzyme effectiveness at low temperatures. Comparative genome analyses suggest that the psychrophilic lifestyle is most likely conferred not by a unique set of genes but by a collection of synergistic changes in overall genome content and amino acid composition.
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