Gene_Locus Report

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Gene_locus Report for: cordi-q6nfz1

Corynebacterium diphtheriae putative prolyl aminopeptidase

Comment
Other strains: Corynebacterium diphtheriae (31A; 241; INCA 402; BH8; ATCC 27012 / C7 (beta); CDCE 8392; HC01; HC02; HC03; HC04; PW8; VA01; bv. intermedius str. NCTC 5011; DSM 43988; str. Aberdeen)


Relationship
Family|Proline_iminopeptidase
Block| X
Position in NCBI Life Tree|Corynebacterium diphtheriae
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Actinobacteria [phylum]: N E > Actinobacteria [class]: N E > Corynebacteriales: N E > Corynebacteriaceae: N E > Corynebacterium: N E > Corynebacterium diphtheriae: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
Sequence
Graphical view for this peptide sequence: cordi-q6nfz1
Colored MSA for Proline_iminopeptidase (raw)
MNTRTSRYLGLTIHEHTLGHIFARELVPDGGEDWPAMVYFQGGPGFGAPR
PQSIDGVIGQALKTHRVILLDQRGTGRSQPIDVPLAQLRQEYIVHDAEEL
RKALGFEKWSLYGQSFGGFCITAYQSMYPESVTEAYITGGLPSLDRHVDD
VYRATFSKLLYRHRQFYTQFPWVEDKIREVCHHLDVSEELLPTGERLSSR
RLRTIGIDLGRSSGFYSLAYLFEDPFVNIHGEKRLRPDFLVDVGQRVSFA
GAPLYAAIHESIYGGIGGTTTNWSAHRIREEFPGCEENADPRSAEPFYLT
GEHIFPWQFDEDPALQPYKAAAEQLATTQWEHSPYDAEVLKEQAAVTAAC
VYLDDAFVPFELSMDTAHTYRDLRLHVTNRFQHDGIRWDGAGILSTLRDK
VLDH
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MNTRTSRYLGLTIHEHTLGHIFARELVPDGGEDWPAMVYFQGGPGFGAPR
PQSIDGVIGQALKTHRVILLDQRGTGRSQPIDVPLAQLRQEYIVHDAEEL
RKALGFEKWSLYGQSFGGFCITAYQSMYPESVTEAYITGGLPSLDRHVDD
VYRATFSKLLYRHRQFYTQFPWVEDKIREVCHHLDVSEELLPTGERLSSR
RLRTIGIDLGRSSGFYSLAYLFEDPFVNIHGEKRLRPDFLVDVGQRVSFA
GAPLYAAIHESIYGGIGGTTTNWSAHRIREEFPGCEENADPRSAEPFYLT
GEHIFPWQFDEDPALQPYKAAAEQLATTQWEHSPYDAEVLKEQAAVTAAC
VYLDDAFVPFELSMDTAHTYRDLRLHVTNRFQHDGIRWDGAGILSTLRDK
VLDH


References
    Title: Draft genome sequence of Corynebacterium diphtheriae biovar intermedius NCTC 5011
    Sangal V, Tucker NP, Burkovski A, Hoskisson PA
    Ref: Journal of Bacteriology, 194:4738, 2012 : PubMed

            

    Title: Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia
    Trost E, Blom J, Soares Sde C, Huang IH, Al-Dilaimi A, Schroder J, Jaenicke S, Dorella FA, Rocha FS and Tauch A <13 more author(s)>
    Ref: Journal of Bacteriology, 194:3199, 2012 : PubMed

            

    Title: The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129
    Cerdeno-Tarraga AM, Efstratiou A, Dover LG, Holden MT, Pallen M, Bentley SD, Besra GS, Churcher C, James KD and Parkhill J <16 more author(s)>
    Ref: Nucleic Acids Research, 31:6516, 2003 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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