Gene_Locus Report
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Gene_locus Report for: cytjo-q1xwu4

Flavobacterium johnsoniae, type IV secretory pathway virj component-like precursor

Comment
Other strains: Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101);(Cytophaga johnsonae)


Relationship
Family|VirJ
Block| X
Position in NCBI Life Tree|Flavobacterium johnsoniae UW101
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > FCB group: N E > Bacteroidetes/Chlorobi group: N E > Bacteroidetes: N E > Flavobacteriia: N E > Flavobacteriales: N E > Flavobacteriaceae: N E > Flavobacterium: N E > Flavobacterium johnsoniae: N E > Flavobacterium johnsoniae UW101: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : AAPM01000001, WP_073409523, WP_012025175
2 UniProt : A0A1M5N351, A5FF16
2 Interpro : A0A1M5N351, A5FF16
2 Pfam : A0A1M5N351, A5FF16
2 PIRSF : A0A1M5N351, A5FF16
2 SUPERFAM : A0A1M5N351, A5FF16
Sequence
Peptide
Graphical view for this peptide sequence: cytjo-q1xwu4
Colored MSA for VirJ (raw) 
MNKKIILILSIFICSTVVFAAAQDTIRVGAFGKVTLYKPKTDPNAVVLFI
SGDGGWNSGVVEMAKNIVDQGGLVAGIDIQHYFKAIKKEKNKCYYPAGDF
EELSLILQKKLKLKQYFKPVLIGYSSGATLVYGMLAQAPANTFSGAVALG
FCPDIETDRTLCDGSGLTSHVLKEGKAYYLDKTEKLTAPFIVLQGATDQV
CNYADTKKYMDGLKEGKLITLSKVGHGFSVTKNWLPQFIEAYKEILNTPN
YARQKAEQNPLLKEQNLAPLPFEMPLTLIPAKNKDENLPIAFLISGDGGW
TSFDQSVGEALAEKGISVIGLDAQKYFWNAKTPLETSAAISKAVEHYLQQ
WNKKTFILAGYSFGASVVPFAAANFPEPLKEKLKGVYSLSPDVKADFEIH
IADMLSLGSSKDNYDVISEIKKIKAYNPVCFFGTEEDPETRKRFAESDIK
TIQIPGSHHYNNDYAKVTESIIKEMK
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA
MNKKIILILSIFICSTVVFAAAQDTIRVGAFGKVTLYKPKTDPNAVVLFI
SGDGGWNSGVVEMAKNIVDQGGLVAGIDIQHYFKAIKKEKNKCYYPAGDF
EELSLILQKKLKLKQYFKPVLIGYSSGATLVYGMLAQAPANTFSGAVALG
FCPDIETDRTLCDGSGLTSHVLKEGKAYYLDKTEKLTAPFIVLQGATDQV
CNYADTKKYMDGLKEGKLITLSKVGHGFSVTKNWLPQFIEAYKEILNTPN
YARQKAEQNPLLKEQNLAPLPFEMPLTLIPAKNKDENLPIAFLISGDGGW
TSFDQSVGEALAEKGISVIGLDAQKYFWNAKTPLETSAAISKAVEHYLQQ
WNKKTFILAGYSFGASVVPFAAANFPEPLKEKLKGVYSLSPDVKADFEIH
IADMLSLGSSKDNYDVISEIKKIKAYNPVCFFGTEEDPETRKRFAESDIK
TIQIPGSHHYNNDYAKVTESIIKEMK


No Reference
Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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