danre-d2x2g1

 
Danio rerio (Zebrafish) (Brachydanio rerio) Neuroligin 2

Relationship
Family Neuroligin
Block C
Danio rerio position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Actinopterygii: N E > Actinopteri: N E > Neopterygii: N E > Teleostei: N E > Osteoglossocephalai: N E > Clupeocephala: N E > Otomorpha: N E > Ostariophysi: N E > Otophysi: N E > Cypriniphysae: N E > Cypriniformes: N E > Cyprinoidea: N E > Cyprinidae: N E > Danio: N E > Danio rerio: N E

Molecular evidence
Database
No mutation
No structure
No kinetic



3 Genbank : GQ489192, GQ892834, CT573337
3 UniProt : D2X2G1, D0EVW9, F1QX74
3 UniProtTrembl : D2X2G1, D0EVW9, F1QX74
3 Interpro : D2X2G1, D0EVW9, F1QX74
3 Prodom : D2X2G1, D0EVW9, F1QX74
3 Pfam : D2X2G1, D0EVW9, F1QX74
3 PIRSF : D2X2G1, D0EVW9, F1QX74
3 SUPERFAM : D2X2G1, D0EVW9, F1QX74
3 QuickSwissBlast : D2X2G1, D0EVW9, F1QX74
 
Sequence
Graphical view for this peptide sequence: danre-d2x2g1
Colored MSA for Neuroligin (raw)
MSSVDVARSRRETVRSCPRRISDTCLVWLLGLALRLALSSCQRADLTAAK
HPMVTTGYGKLRGVRKELNNEILGPVEQYLGVPYATPPVGERRFQPPEAP
GSWQEIRNATQFAPVCPQNIHGVLPEIMLPVWFTDNLDAAAAYVQNQSED
CLYLNVYVPTEDGPLTKKHDESSMNRPRDEDIRDRRKKPVMLFIHGGSFM
EGTGNMFDASVLAAYGNVIVVTMNYGLGALGFLSSGDQSAKGNYGLLDQI
QALRWLNENIGHFGGDPERITIFGSGAGASCVNLLILSHHSEGLFQRAIA
QSGSAISSWSVNYRPLMYTKILAKKVGCSYSDTADLVDCLRRKSYRELVD
QDVQPARYHIAFGPVVDGDVVPDDPEILMQQGEFLNYDILLGVNQGEGLK
FVDDNEGEEGISAASFDYTISNFVDNLYGYPEGKDILRETIKFMYTDWAD
RDNGDMRRKTLLALFTDHQWVAPAVATAKLHAEFQSPVYFYTFHHHCQTE
ARPEWADAAHGDEIPYVFGVPMVGATELFPCNFSKNDIMLSAVVMTYWTN
FAKTGDPNIPVPQDTKFIHTKPNRFEEVIWTKFSSKDKQYLHIGLKPRIR
DNYRANKVAFWLELVPHLHTIHDEIPTYTTQLPPGAPHRPGWKGTAQSPG
TRSTRHPTVSTYPPDPDLEGSEHPPERFPFPSNTRDYSTELSVTVAVGAS
LLFLNVLAFAALYYKRDKRHELLQRRHRRLSPQRGAVPGVGIVGGPPHND
LALSQEEELMSLQMKQQRVELDHGTPLPTRGLHGDLEPLRPPVCPPDYTL
ALRRAPEDVPLMTANTLSMIPSTITGMQPLHAFNTYPPAPAPSAGHSNNA
LPHQHSTTRV
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MSSVDVARSRRETVRSCPRRISDTCLVWLLGLALRLALSSCQRADLTAAK
HPMVTTGYGKLRGVRKELNNEILGPVEQYLGVPYATPPVGERRFQPPEAP
GSWQEIRNATQFAPVCPQNIHGVLPEIMLPVWFTDNLDAAAAYVQNQSED
CLYLNVYVPTEDGPLTKKHDESSMNRPRDEDIRDRRKKPVMLFIHGGSFM
EGTGNMFDASVLAAYGNVIVVTMNYGLGALGFLSSGDQSAKGNYGLLDQI
QALRWLNENIGHFGGDPERITIFGSGAGASCVNLLILSHHSEGLFQRAIA
QSGSAISSWSVNYRPLMYTKILAKKVGCSYSDTADLVDCLRRKSYRELVD
QDVQPARYHIAFGPVVDGDVVPDDPEILMQQGEFLNYDILLGVNQGEGLK
FVDDNEGEEGISAASFDYTISNFVDNLYGYPEGKDILRETIKFMYTDWAD
RDNGDMRRKTLLALFTDHQWVAPAVATAKLHAEFQSPVYFYTFHHHCQTE
ARPEWADAAHGDEIPYVFGVPMVGATELFPCNFSKNDIMLSAVVMTYWTN
FAKTGDPNIPVPQDTKFIHTKPNRFEEVIWTKFSSKDKQYLHIGLKPRIR
DNYRANKVAFWLELVPHLHTIHDEIPTYTTQLPPGAPHRPGWKGTAQSPG
TRSTRHPTVSTYPPDPDLEGSEHPPERFPFPSNTRDYSTELSVTVAVGAS
LLFLNVLAFAALYYKRDKRHELLQRRHRRLSPQRGAVPGVGIVGGPPHND
LALSQEEELMSLQMKQQRVELDHGTPLPTRGLHGDLEPLRPPVCPPDYTL
ALRRAPEDVPLMTANTLSMIPSTITGMQPLHAFNTYPPAPAPSAGHSNNA
LPHQHSTTRV

no DNA




References
    Title: Differential expression of neuroligin genes in the nervous system of zebrafish
    Davey C, Tallafuss A, Washbourne P
    Ref: Developmental Dynamics, 239:703, 2010 : PubMed

            

    Title: Characterization of the neuroligin gene family expression and evolution in zebrafish
    Rissone A, Sangiorgio L, Monopoli M, Beltrame M, Zucchi I, Bussolino F, Arese M, Cotelli F
    Ref: Developmental Dynamics, 239:688, 2010 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
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