Gene_Locus Report

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Gene_locus Report for: dauca-a0a166dau6

Daucus carota subsp. sativus. Uncharacterized protein

Relationship
Family|Chlorophyllase
Block| L
Position in NCBI Life Tree|Daucus carota subsp. sativus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > asterids: N E > campanulids: N E > Apiales: N E > Apiineae: N E > Apiaceae: N E > Apioideae: N E > Scandiceae: N E > Daucinae: N E > Daucus: N E > Daucus sect. Daucus: N E > Daucus carota: N E > Daucus carota subsp. sativus: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : LNRQ01000002, XP_017232816
1 UniProt : A0A166DAU6
1 UniProt : A0A166DAU6
1 Interpro : A0A166DAU6
1 Prodom : A0A166DAU6
1 Pfam : A0A166DAU6
1 PIRSF : A0A166DAU6
1 SUPERFAM : A0A166DAU6
Sequence
Graphical view for this peptide sequence: dauca-a0a166dau6
Colored MSA for Chlorophyllase (raw)
MSVSDAKPALATSSVFERGNLEVKGIKVEKSAERKALFIVSPTKDGKYPV
FLFVHGCCVSNTAYSQLLQHVASHGFIAVAPGDPLVSSLLCCCGDQELDS
DANVLDWMPDGLPALLPDNVTPDMTKIAVGGHSRGGKIAFALAISTTNLK
ISAVFGVDPVAGGSVDNRPQPKIFSYIPRCLDLNIPVAIIGTGLGSQAKC
IIPPFAPCGVNHAEFFNESKPPIYYFLAKDYGHGDMLDDGIEYWFTKLLT
KHGQGSKELMIKACGGIIVAFLNAKLKDEEEDLRIIGEEPSVAPIKLDPV
LYVEN
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MSVSDAKPALATSSVFERGNLEVKGIKVEKSAERKALFIVSPTKDGKYPV
FLFVHGCCVSNTAYSQLLQHVASHGFIAVAPGDPLVSSLLCCCGDQELDS
DANVLDWMPDGLPALLPDNVTPDMTKIAVGGHSRGGKIAFALAISTTNLK
ISAVFGVDPVAGGSVDNRPQPKIFSYIPRCLDLNIPVAIIGTGLGSQAKC
IIPPFAPCGVNHAEFFNESKPPIYYFLAKDYGHGDMLDDGIEYWFTKLLT
KHGQGSKELMIKACGGIIVAFLNAKLKDEEEDLRIIGEEPSVAPIKLDPV
LYVEN


Reference
    Title: A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution
    Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W and Simon P <11 more author(s)>
    Ref: Nat Genet, 48:657, 2016 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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