Gene_Locus Report

Biblio print

Add to basket

Go to basket

Tree Display

AceDB Schema

XML Display

Feedback

Gene_locus Report for: daucs-a0a165a8w1

Daucus carota subsp. sativus (Carrot). Uncharacterized protein

Relationship
Family|Plant_lipase_EDS1-like
Block| L
Position in NCBI Life Tree|Daucus carota subsp. sativus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > asterids: N E > campanulids: N E > Apiales: N E > Apiineae: N E > Apiaceae: N E > Apioideae: N E > Scandiceae: N E > Daucinae: N E > Daucus: N E > Daucus sect. Daucus: N E > Daucus carota: N E > Daucus carota subsp. sativus: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : LNRQ01000004, XP_017244056
1 UniProt : A0A165A8W1
1 UniProt : A0A165A8W1
1 Interpro : A0A165A8W1
1 Prodom : A0A165A8W1
1 Pfam : A0A165A8W1
1 PIRSF : A0A165A8W1
1 SUPERFAM : A0A165A8W1
Sequence
Graphical view for this peptide sequence: daucs-a0a165a8w1
Colored MSA for Plant_lipase_EDS1-like (raw)
MNFGISEELIKKACELSMKAHECCDESNQYIYKECQWSLPAAALFSFAGV
WSVRDWFDESSCYGETDIDLDLFPSLKSIGNQEPALVNQAFLCRFRAILE
NSSLSVEVDETIREGKQVVFAGHSSGGPMAIFATLWFLEKYTNTECSAAP
RCVTFGCPLVGNHIFPHAINRENWSQYFIHFVTKYDIVPRIMFAPCNAFE
GGLQQVLDFSNPRSIFYKHTSLITSREASSFVENVLTNLSSVASNVACNL
MGCTNLLVQNFSSFVDLSPYRPFGTFIFCTRNRKMVVVRNSNAVLQFLSH
SSQLQSRDEGTNFAGQILEESLLYNDILQHSAETDRVITYLDSLSAEALK
TGGRALDDLGFSLRAKLCLLAAEDYEQQKLRREEKIDKESIKEKHNWLQE
YRKDCELRKGGYYFATKTKADEQDLIAGVVGLQLGAMWDEIVEMIKMYQL
PDEFEAKKEWIELGAKDRQLVEPIAIAAYYVRGLNDNTGPFMLNGRSSVF
KLTQRWSDHRKKLPIESITESCFWAEVEELMLLCKKSSYEDLKERILRLE
NQILHWNEAKVLQEDVFWEKSILRQWWNLENTSRPT
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MNFGISEELIKKACELSMKAHECCDESNQYIYKECQWSLPAAALFSFAGV
WSVRDWFDESSCYGETDIDLDLFPSLKSIGNQEPALVNQAFLCRFRAILE
NSSLSVEVDETIREGKQVVFAGHSSGGPMAIFATLWFLEKYTNTECSAAP
RCVTFGCPLVGNHIFPHAINRENWSQYFIHFVTKYDIVPRIMFAPCNAFE
GGLQQVLDFSNPRSIFYKHTSLITSREASSFVENVLTNLSSVASNVACNL
MGCTNLLVQNFSSFVDLSPYRPFGTFIFCTRNRKMVVVRNSNAVLQFLSH
SSQLQSRDEGTNFAGQILEESLLYNDILQHSAETDRVITYLDSLSAEALK
TGGRALDDLGFSLRAKLCLLAAEDYEQQKLRREEKIDKESIKEKHNWLQE
YRKDCELRKGGYYFATKTKADEQDLIAGVVGLQLGAMWDEIVEMIKMYQL
PDEFEAKKEWIELGAKDRQLVEPIAIAAYYVRGLNDNTGPFMLNGRSSVF
KLTQRWSDHRKKLPIESITESCFWAEVEELMLLCKKSSYEDLKERILRLE
NQILHWNEAKVLQEDVFWEKSILRQWWNLENTSRPT


Reference
    Title: A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution
    Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W and Simon P <11 more author(s)>
    Ref: Nat Genet, 48:657, 2016 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer