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Gene_locus Report for: daucs-a0a165a8x0

Daucus carota subsp. sativus (Carrot). Uncharacterized protein

Relationship
Family|Plant_lipase_EDS1-like
Block| L
Position in NCBI Life Tree|Daucus carota subsp. sativus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > asterids: N E > campanulids: N E > Apiales: N E > Apiineae: N E > Apiaceae: N E > Apioideae: N E > Scandiceae: N E > Daucinae: N E > Daucus: N E > Daucus sect. Daucus: N E > Daucus carota: N E > Daucus carota subsp. sativus: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : LNRQ01000004, XP_017248595
1 UniProt : A0A165A8X0
1 UniProt : A0A165A8X0
1 Interpro : A0A165A8X0
1 Prodom : A0A165A8X0
1 Pfam : A0A165A8X0
1 PIRSF : A0A165A8X0
1 SUPERFAM : A0A165A8X0
Sequence
Graphical view for this peptide sequence: daucs-a0a165a8x0
Colored MSA for Plant_lipase_EDS1-like (raw)
MSFGVSEEVIKKACELSMKAHECCDESSNYLYEECQLDSTAVAVFSFAGA
WSVTDLFAENCSSYGETKIDLALFPSLKSIGSQEAALVNEAFLCRFKVVF
GNSSLSVKVDGAVKEQKQVVFAGHGLGGPMANFATLWFLEKYTRIGCIAT
PRCVTFGSPLVGNRILPHAVRRENWSQYFIHFVIRHDIVPCIMFAPYLSV
EKELQKVLDFLNPRSVLYKNSSVFLSSEASSFVEKVLTNLSSVASYDACN
LAGCKNLLVDNFSSFMELSPYRPFGTYIFCSNNGRMVVVRNSDAVLQLLF
HSSQLQSRDECAMFAGQVLEMSLGYKDIFQESVEEERVIYLDSASVEFMK
TEKMTLDDLGLSLKAKVCLLTAVEFEEQKLICEKNIDKEEIIEKLNWLED
YRSNCEHRKKCCYDAFRIKADEDDFHAGVVSLQLGGMWNDILEMLKMNQL
PDKFEGNKEWIELGTMYRRLAEPIAIGSYYARGLNDDSGPFMIKGRSNVF
KFTQRWLDHKEQFPVEIISESCFWAEVEELIILEKKKTYDGLKERIISLE
RQVLHWHEARVLESGVFFENSTFTKWWYTLPEQHKSESCIRELFSQY
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MSFGVSEEVIKKACELSMKAHECCDESSNYLYEECQLDSTAVAVFSFAGA
WSVTDLFAENCSSYGETKIDLALFPSLKSIGSQEAALVNEAFLCRFKVVF
GNSSLSVKVDGAVKEQKQVVFAGHGLGGPMANFATLWFLEKYTRIGCIAT
PRCVTFGSPLVGNRILPHAVRRENWSQYFIHFVIRHDIVPCIMFAPYLSV
EKELQKVLDFLNPRSVLYKNSSVFLSSEASSFVEKVLTNLSSVASYDACN
LAGCKNLLVDNFSSFMELSPYRPFGTYIFCSNNGRMVVVRNSDAVLQLLF
HSSQLQSRDECAMFAGQVLEMSLGYKDIFQESVEEERVIYLDSASVEFMK
TEKMTLDDLGLSLKAKVCLLTAVEFEEQKLICEKNIDKEEIIEKLNWLED
YRSNCEHRKKCCYDAFRIKADEDDFHAGVVSLQLGGMWNDILEMLKMNQL
PDKFEGNKEWIELGTMYRRLAEPIAIGSYYARGLNDDSGPFMIKGRSNVF
KFTQRWLDHKEQFPVEIISESCFWAEVEELIILEKKKTYDGLKERIISLE
RQVLHWHEARVLESGVFFENSTFTKWWYTLPEQHKSESCIRELFSQY


Reference
    Title: A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution
    Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W and Simon P <11 more author(s)>
    Ref: Nat Genet, 48:657, 2016 : PubMed

            


Other Papers


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Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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