Gene_locus Report for: dromo-b4kjx0 Drosophila mojavensis (Fruit fly) GI24029
Comment
only n-term Pfam A COesterase 123 912 Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Protostomia: N E > Ecdysozoa: N E > Panarthropoda: N E > Arthropoda: N E > Mandibulata: N E > Pancrustacea: N E > Hexapoda: N E > Insecta: N E > Dicondylia: N E > Pterygota: N E > Neoptera: N E > Holometabola: N E > Diptera: N E > Brachycera: N E > Muscomorpha: N E > Eremoneura: N E > Cyclorrhapha: N E > Schizophora: N E > Acalyptratae: N E > Ephydroidea: N E > Drosophilidae: N E > Drosophilinae: N E > Drosophilini: N E > Drosophila [fruit fly, genus]: N E > Drosophila [fruit fly, subgenus]: N E > repleta group: N E > mulleri subgroup: N E > mojavensis species complex: N E > Drosophila mojavensis: N E A85-EsteraseD-FGH :
dromo-b4k9d3 Drosophila mojavensis (Fruit fly) GI10052 .
ABHD12-PHARC :
dromo-b4ku70 Drosophila mojavensis (Fruit fly). Uncharacterized protein, isoform A .
ABHD18 :
dromo-b4ky12 Drosophila mojavensis (Fruit fly) GI13377 .
abh_upf0017 :
dromo-b4kg16 Drosophila mojavensis (Fruit fly) GI18063 ,
dromo-b4kst4 Drosophila mojavensis (Fruit fly) GI19583 .
ACHE :
dromo-ACHE Drosophila mojavensis (Fruit fly) acetylcholinesterase GI24219 .
Acidic_Lipase :
dromo-b4k6a7 Drosophila mojavensis (Fruit fly) GI24673 ,
dromo-b4k6a8 Drosophila mojavensis (Fruit fly) Lipase ,
dromo-b4k571 Drosophila mojavensis (Fruit fly) Lipase ,
dromo-b4k721 Drosophila mojavensis (Fruit fly) Lipase ,
dromo-b4ka89 Drosophila mojavensis (Fruit fly) Lipase ,
dromo-b4kg90 Drosophila mojavensis (Fruit fly) Lipase ,
dromo-b4kid3 Drosophila mojavensis (Fruit fly) Lipase ,
dromo-b4kkp6 Drosophila mojavensis (Fruit fly) GI17823 ,
dromo-b4kkp8 Drosophila mojavensis (Fruit fly) GI17824 ,
dromo-b4kkq8 Drosophila mojavensis (Fruit fly) GI23403 ,
dromo-b4kkr0 Drosophila mojavensis (Fruit fly) GI23381 ,
dromo-b4kkr3 Drosophila mojavensis (Fruit fly) Lipase ,
dromo-b4kkr4 Drosophila mojavensis (Fruit fly) Lipase ,
dromo-b4kks0 Drosophila mojavensis (Fruit fly) Lipase ,
dromo-b4kks1 Drosophila mojavensis (Fruit fly) Lipase ,
dromo-b4kks2 Drosophila mojavensis (Fruit fly) GI23315 ,
dromo-b4kp16 Drosophila mojavensis (Fruit fly) Lipase ,
dromo-b4ky44 Drosophila mojavensis (Fruit fly) Lipase .
Carboxypeptidase_S10 :
dromo-b4knt4 Drosophila mojavensis (Fruit fly) GI19272 .
Carb_B_Arthropoda :
dromo-b4k6q8 Drosophila mojavensis (Fruit fly) GI23482 ,
dromo-b4k6q9 Drosophila mojavensis (Fruit fly) GI23481 ,
dromo-b4k6r1 Drosophila mojavensis (Fruit fly) GI23480 ,
dromo-b4k6r3 Drosophila mojavensis (Fruit fly) GI23478 ,
dromo-b4k6r4 Drosophila mojavensis (Fruit fly) GI23477 ,
dromo-b4k6r5 Drosophila mojavensis (Fruit fly) GI24123 ,
dromo-b4k6r6 Drosophila mojavensis (Fruit fly) GI23476 ,
dromo-b4k6r7 Drosophila mojavensis (Fruit fly) GI23475 ,
dromo-b4k6r8 Drosophila mojavensis (Fruit fly) GI23473 ,
dromo-b4k6r9 Drosophila mojavensis (Fruit fly) GI23472 ,
dromo-b4k6s0 Drosophila mojavensis (Fruit fly) GI24124 ,
dromo-b4ka74 Drosophila mojavensis (Fruit fly) GI10706 ,
dromo-b4kaj4 Drosophila mojavensis (Fruit fly) GI10121 ,
dromo-b4kdg2 Drosophila mojavensis (Fruit fly) GI10270 ,
dromo-b4kdh4 Drosophila mojavensis (Fruit fly) GI22476 ,
dromo-b4kdh5 Drosophila mojavensis (Fruit fly) GI22474 ,
dromo-b4kdh6 Drosophila mojavensis (Fruit fly) GI22473 ,
dromo-A0A0Q9XDF2 Drosophila mojavensis (Fruit fly) DmojGI25494 ,
dromo-b4kdh8.1 Drosophila mojavensis (Fruit fly) GI22471 ,
dromo-b4kdh8.2 Drosophila mojavensis (Fruit fly) GI22471 ,
dromo-b4kh21 Drosophila mojavensis (Fruit fly) GI11062 ,
dromo-b4kqh1 Drosophila mojavensis (Fruit fly) GI21011 ,
dromo-b4ktf5 Drosophila mojavensis (Fruit fly) GI19530 ,
dromo-b4ktf6 Drosophila mojavensis (Fruit fly) GI19531 ,
dromo-b4ky36 Drosophila mojavensis (Fruit fly) GI13393 ,
dromo-b4l6l9 Drosophila mojavensis (Fruit fly) GI16153 .
CGI-58_ABHD5_ABHD4 :
dromo-b4ksy6 Drosophila mojavensis (Fruit fly) GI19993 .
DPP4N_Peptidase_S9 :
dromo-b4kde1 Drosophila mojavensis (Fruit fly) GI22496 ,
dromo-b4kht7 Drosophila mojavensis (Fruit fly) GI18176 ,
dromo-b4kla1 Drosophila mojavensis (Fruit fly) GI13357 ,
dromo-b4kvl3 Drosophila mojavensis (Fruit fly) GI11500 ,
dromo-b4l4u5 Drosophila mojavensis (Fruit fly) Drosophila navojoa GI15832 .
Gliotactin :
dromo-b4kki1 Drosophila mojavensis (Fruit fly) GI17245 .
Glutactin :
dromo-b4kg04 Drosophila mojavensis (Fruit fly) GI18058 ,
dromo-b4kg05 Drosophila mojavensis (Fruit fly) GI21473 ,
dromo-b4kg06 Drosophila mojavensis (Fruit fly) GI21463 .
Juvenile_hormone_esterase :
dromo-b4kqa6 Drosophila mojavensis (Fruit fly) GI19155 ,
dromo-b4kqa7 Drosophila mojavensis (Fruit fly) GI19154 ,
dromo-b4kqa8 Drosophila mojavensis (Fruit fly) GI19153 .
LIDHydrolase :
dromo-b4l0n8 Drosophila mojavensis (Fruit fly) GI12271 .
Neuroligin :
dromo-b4k6s1 Drosophila mojavensis (Fruit fly) GI23471 ,
dromo-b4k6s2 Drosophila mojavensis (Fruit fly) GI24125 ,
dromo-b4k9c7 Drosophila mojavensis (Fruit fly) GI22718 .
Neurotactin :
dromo-b4kxz6 Drosophila mojavensis (Fruit fly) GI13369 .
NLS3-Tex30 :
dromo-b4kt84 Drosophila mojavensis (Fruit fly) GI18463 .
OtherNon-catalytic_C :
dromo-b4kh20 Drosophila mojavensis (Fruit fly) GI17573 ,
dromo-b4kik0 Drosophila mojavensis (Fruit fly) GI14542 ,
dromo-b4klv8 Drosophila mojavensis (Fruit fly) GI20686 ,
dromo-b4kp08 Drosophila mojavensis (Fruit fly) GI20873 .
Pectinacetylesterase-Notum :
dromo-b4l084 Drosophila mojavensis (Fruit fly) GI12321 .
PPase_methylesterase_euk :
dromo-b4kvw2 Drosophila mojavensis (Fruit fly) Protein phosphatase methylesterase 1 .
Prolylcarboxypeptidase :
dromo-b4kcl2 Drosophila mojavensis (Fruit fly) GI24472 ,
dromo-b4kcl3 Drosophila mojavensis (Fruit fly) GI24473 ,
dromo-b4kd55.1 Drosophila mojavensis (Fruit fly) GI23100 ,
dromo-b4kd55.2 Drosophila mojavensis (Fruit fly) GI23100 ,
dromo-b4kd56 Drosophila mojavensis (Fruit fly) GI23098 ,
dromo-b4kd57 Drosophila mojavensis (Fruit fly) GI23097 ,
dromo-b4kg44 Drosophila mojavensis (Fruit fly) GI18077 ,
dromo-b4kzu7 Drosophila mojavensis (Fruit fly) GI12975 .
SERHL :
dromo-b4kwv4 Drosophila mojavensis (Fruit fly) GI12011 ,
dromo-b4kwv5 Drosophila mojavensis (Fruit fly) GI13311 ,
dromo-b4kf70 Drosophila mojavensis (Fruit fly). Uncharacterized protein .
Valacyclovir-hydrolase :
dromo-b4kc20 Drosophila mojavensis (Fruit fly) GI10790 Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: dromo-b4kjx0 Colored MSA for Neuroligin (raw)
MPPITPSTWKTVRNADRFSPVCPQNVPIPPNGPEALLELPRARLAQLRRL
LPLLKNQSEDCLYLNIYVPYETQRARHNEAANDSASTSASSSSKSSTSST
SNSLLSTVLFIHGESYDWNSGNPYDGSELAAHGNVIVVTINFRLGIFGFL
KTGGKESAQGNFGLMDLVAGLHWLKENLPAFGGNPQSITLLGYGTGAVLA
NILAVSPVASDLIQRAVLISGTALSPWAIQKNPLFVKRRVAEQTGCHGDM
LYDDLAPCLRTKSVAELLSVKIDHPRFLVGFAPFVDGTVITPKTDAMSST
ALPLGSAIVSTSGIEYANFPKRDLMFCLTSVESYLDLSAQDLEFGFNETR
RDRILRTFVRNNFHYHLNEIFAVLKNEYTDWEKAIRNPLSARDATLQFLS
DGHTASPLIKLGYMHSLRGGRTYFVHFKHRTVEDEYPQRTGSVHGEDVPF
WLGLPVSPLFPHNYTAQEHQIGRLMLRYLANFAKTGNPNHSTTGQALPTA
SQSRAALHPQRKRSAPRYQDALATGEALNLAVLYNQRRSNAMHEKRAFVR
RRLRSNDANAPQQSLSTELELGNYDGDELPFWDAYDVVNQLYIELGNKAN
IQSHYRGHKLSMWLNLIPQLHRHFNINDQSMRHHQFQDDLNSRDLYEGVV
RPQLQTKPAEDDNIIIVQTARTTAAPPPTTSKQEMMNATNALGAAGATAT
TECGIDGAMSVSELTTTTQAPKDNRTHGQVETHKDLATASTGIIGNLELL
RRLSGKQFQSYTTALIATVAVGCFLLILNVLIFAGIYHQR
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M P P I T P S T W K T V R N A D R F S P V C P Q N V P I P P N G P E A L L E L P R A R L A Q L R R L L P L L K N Q S E D C L Y L N I Y V P Y E T Q R A R H N E A A N D S A S T S A S S S S K S S T S S T S N S L L S T V L F I H G E S Y D W N S G N P Y D G S E L A A H G N V I V V T I N F R L G I F G F L K T G G K E S A Q G N F G L M D L V A G L H W L K E N L P A F G G N P Q S I T L L G Y G T G A V L A N I L A V S P V A S D L I Q R A V L I S G T A L S P W A I Q K N P L F V K R R V A E Q T G C H G D M L Y D D L A P C L R T K S V A E L L S V K I D H P R F L V G F A P F V D G T V I T P K T D A M S S T A L P L G S A I V S T S G I E Y A N F P K R D L M F C L T S V E S Y L D L S A Q D L E F G F N E T R R D R I L R T F V R N N F H Y H L N E I F A V L K N E Y T D W E K A I R N P L S A R D A T L Q F L S D G H T A S P L I K L G Y M H S L R G G R T Y F V H F K H R T V E D E Y P Q R T G S V H G E D V P F W L G L P V S P L F P H N Y T A Q E H Q I G R L M L R Y L A N F A K T G N P N H S T T G Q A L P T A S Q S R A A L H P Q R K R S A P R Y Q D A L A T G E A L N L A V L Y N Q R R S N A M H E K R A F V R R R L R S N D A N A P Q Q S L S T E L E L G N Y D G D E L P F W D A Y D V V N Q L Y I E L G N K A N I Q S H Y R G H K L S M W L N L I P Q L H R H F N I N D Q S M R H H Q F Q D D L N S R D L Y E G V V R P Q L Q T K P A E D D N I I I V Q T A R T T A A P P P T T S K Q E M M N A T N A L G A A G A T A T T E C G I D G A M S V S E L T T T T Q A P K D N R T H G Q V E T H K D L A T A S T G I I G N L E L L R R L S G K Q F Q S Y T T A L I A T V A V G C F L L I L N V L I F A G I Y H Q R
References
Title: Assembly reconciliationZimin AV , Smith DR , Sutton G , Yorke JA Ref: Bioinformatics, 24 :42, 2008 : PubMed Abstract ESTHER: Zimin_2008_Bioinformatics_24_42 PubMedSearch: Zimin 2008 Bioinformatics 24 42 PubMedID: 18057021 Gene_locus related to this paper: droan-ACHE ,
droan-b3lxv7 ,
droan-b3ly87 ,
droan-b3lyh4 ,
droan-b3lyh5 ,
droan-b3lyh7 ,
droan-b3lyh9 ,
droan-b3lyi0 ,
droan-b3lyi2 ,
droan-b3lyi3 ,
droan-b3lyi4 ,
droan-b3lyx4 ,
droan-b3lyx5 ,
droan-b3lyx6 ,
droan-b3lyx7 ,
droan-b3lyx9 ,
droan-b3lz72 ,
droan-b3m4e3 ,
droan-b3m5w1 ,
droan-b3m6i7 ,
droan-b3m7v2 ,
droan-b3m9p3 ,
droan-b3m524 ,
droan-b3m635 ,
droan-b3mdh7 ,
droan-b3mdw8 ,
droan-b3mee1 ,
droan-b3mf47 ,
droan-b3mf48 ,
droan-b3mg94 ,
droan-b3mgn6 ,
droan-b3mii3 ,
droan-b3mkr0 ,
droan-b3ml20 ,
droan-b3mly4 ,
droan-b3mly5 ,
droan-b3mly6 ,
droan-b3mnb5 ,
droan-b3muw4 ,
droan-b3muw8 ,
droan-b3n2j7 ,
droan-c5idb2 ,
droer-ACHE ,
droer-b3n5y4 ,
droer-b3n7d2 ,
droer-b3n7d3 ,
droer-b3n7d4 ,
droer-b3n7k8 ,
droer-b3n8e4 ,
droer-b3n8f7 ,
droer-b3n8f8 ,
droer-b3n9e1 ,
droer-b3n612 ,
droer-b3nar5 ,
droer-b3nb91 ,
droer-b3nct9 ,
droer-b3ndh9 ,
droer-b3ndq8 ,
droer-b3ne97 ,
droer-b3nfq9 ,
droer-b3nmh4 ,
droer-b3nmy2 ,
droer-b3npx2 ,
droer-b3npx3 ,
droer-b3nq76 ,
droer-b3nr28 ,
droer-b3nst4 ,
droer-b3nyp5.1 ,
droer-b3nyp5.2 ,
droer-b3nyp6 ,
droer-b3nyp7 ,
droer-b3nyp8 ,
droer-b3nyp9 ,
droer-b3nyq3 ,
droer-b3nz06 ,
droer-b3nz14 ,
droer-b3nzj0 ,
droer-b3p2x6 ,
droer-b3p2x7 ,
droer-b3p2x9 ,
droer-b3p2y1 ,
droer-b3p2y2 ,
droer-b3p7b4 ,
droer-EST6 ,
droer-q670j5 ,
drogr-ACHE ,
drogr-b4iww3 ,
drogr-b4iwy3 ,
drogr-b4ixf7 ,
drogr-b4ixh4 ,
drogr-b4j2u8 ,
drogr-b4j3v3 ,
drogr-b4j4g7 ,
drogr-b4j4x9 ,
drogr-b4j6e6 ,
drogr-b4j9c9 ,
drogr-b4j9y4 ,
drogr-b4j156 ,
drogr-b4j685 ,
drogr-b4ja76 ,
drogr-b4jcf0 ,
drogr-b4jcf1 ,
drogr-b4jdh6 ,
drogr-b4jdz1 ,
drogr-b4jdz2 ,
drogr-b4jdz4 ,
drogr-b4jf76 ,
drogr-b4jf79 ,
drogr-b4jf80 ,
drogr-b4jf81 ,
drogr-b4jf82 ,
drogr-b4jf83 ,
drogr-b4jf84 ,
drogr-b4jf85 ,
drogr-b4jf87 ,
drogr-b4jf91 ,
drogr-b4jf92 ,
drogr-b4jg66 ,
drogr-b4jnh9 ,
drogr-b4jpc6 ,
drogr-b4jql2 ,
drogr-b4jrh5 ,
drogr-b4jth3 ,
drogr-b4jti1 ,
drogr-b4jul5 ,
dromo-ACHE ,
dromo-b4k6q8 ,
dromo-b4k6q9 ,
dromo-b4k6r1 ,
dromo-b4k6r3 ,
dromo-b4k6r4 ,
dromo-b4k6r5 ,
dromo-b4k6r6 ,
dromo-b4k6r7 ,
dromo-b4k6r8 ,
dromo-b4k6r9 ,
dromo-b4k6s0 ,
dromo-b4k6s1 ,
dromo-b4k6s2 ,
dromo-b4k9c7 ,
dromo-b4k9d3 ,
dromo-b4ka74 ,
dromo-b4kaj4 ,
dromo-b4kdg2 ,
dromo-b4kdh4 ,
dromo-b4kdh5 ,
dromo-b4kdh6 ,
dromo-A0A0Q9XDF2 ,
dromo-b4kdh8.1 ,
dromo-b4kdh8.2 ,
dromo-b4kg04 ,
dromo-b4kg05 ,
dromo-b4kg06 ,
dromo-b4kg16 ,
dromo-b4kh20 ,
dromo-b4kh21 ,
dromo-b4kik0 ,
dromo-b4kjx0 ,
dromo-b4kki1 ,
dromo-b4klv8 ,
dromo-b4kp08 ,
dromo-b4kqa6 ,
dromo-b4kqa7 ,
dromo-b4kqa8 ,
dromo-b4kqh1 ,
dromo-b4kst4 ,
dromo-b4ksy6 ,
dromo-b4ktf5 ,
dromo-b4ktf6 ,
dromo-b4kvw2 ,
dromo-b4kxz6 ,
dromo-b4ky12 ,
dromo-b4ky36 ,
dromo-b4l0n8 ,
dromo-b4l6l9 ,
dromo-b4l084 ,
drovi-ACHE ,
drovi-b4lev2 ,
drovi-b4lg54 ,
drovi-b4lg72 ,
drovi-b4lgd5 ,
drovi-b4lgg0 ,
drovi-b4lgn2 ,
drovi-b4lk43 ,
drovi-b4ll59 ,
drovi-b4ll60 ,
drovi-b4lln3 ,
drovi-b4lmk4 ,
drovi-b4lmp0 ,
drovi-b4lpd0 ,
drovi-b4lps0 ,
drovi-b4lrp6 ,
drovi-b4lse7 ,
drovi-b4lse9 ,
drovi-b4lsf0 ,
drovi-b4lsn0 ,
drovi-b4lt32 ,
drovi-b4lxi9 ,
drovi-b4lxj8 ,
drovi-b4lyf3 ,
drovi-b4m0s0 ,
drovi-b4m4h7 ,
drovi-b4m4h8 ,
drovi-b4m4i0 ,
drovi-b4m4i2 ,
drovi-b4m4i3.A ,
drovi-b4m4i3.B ,
drovi-b4m4i4 ,
drovi-b4m4i5 ,
drovi-b4m4i6 ,
drovi-b4m4i7 ,
drovi-b4m4i8 ,
drovi-b4m4i9 ,
drovi-b4m4j2 ,
drovi-b4m5a0 ,
drovi-b4m5a1 ,
drovi-b4m5a2 ,
drovi-b4m7k9 ,
drovi-b4m9g9 ,
drovi-b4m9h0 ,
drovi-b4m599 ,
drovi-b4m918 ,
drovi-b4mfa4 ,
drovi-estes ,
drowi-ACHE ,
drowi-b4mjb9 ,
drowi-b4mqe9 ,
drowi-b4mqf0.2 ,
drowi-b4mqf1 ,
drowi-b4mqf3 ,
drowi-b4mqf4 ,
drowi-b4mqf5 ,
drowi-b4mqq6 ,
drowi-b4mrk3 ,
drowi-b4mtl5 ,
drowi-b4mug2 ,
drowi-b4mw32 ,
drowi-b4mw85 ,
drowi-b4mwz7 ,
drowi-b4mxn5 ,
drowi-b4my54 ,
drowi-b4myh5 ,
drowi-b4n1a7 ,
drowi-b4n3s9 ,
drowi-b4n3x7 ,
drowi-b4n6n0 ,
drowi-b4n6n7 ,
drowi-b4n6u6 ,
drowi-b4n7s6 ,
drowi-b4n7s7 ,
drowi-b4n7s8 ,
drowi-b4n899.1 ,
drowi-b4n8a1 ,
drowi-b4n8a2 ,
drowi-b4n8a3 ,
drowi-b4n8a4 ,
drowi-b4n8a9 ,
drowi-b4n023 ,
drowi-b4n075 ,
drowi-b4n543 ,
drowi-b4n888 ,
drowi-b4n889 ,
drowi-b4n891 ,
drowi-b4n893 ,
drowi-b4n895 ,
drowi-b4n897 ,
drowi-b4n898 ,
drowi-b4n899.2 ,
drowi-b4ng76 ,
drowi-b4nga7 ,
drowi-b4ngb5 ,
drowi-b4njk8 ,
drowi-b4nky0 ,
drowi-b4nn59 ,
drowi-b4nnc1 ,
drowi-b4nng1 ,
drowi-b4nng2 ,
droya-q71d76 ,
drowi-a0a0q9x0t3 ,
drovi-b4mcn9 Abstract
MOTIVATION: Many genomes are sequenced by a collaboration of several centers, and then each center produces an assembly using their own assembly software. The collaborators then pick the draft assembly that they judge to be the best and the information contained in the other assemblies is usually not used. METHODS: We have developed a technique that we call assembly reconciliation that can merge draft genome assemblies. It takes one draft assembly, detects apparent errors, and, when possible, patches the problem areas using pieces from alternative draft assemblies. It also closes gaps in places where one of the alternative assemblies has spanned the gap correctly. RESULTS: Using the Assembly Reconciliation technique, we produced reconciled assemblies of six Drosophila species in collaboration with Agencourt Bioscience and The J. Craig Venter Institute. These assemblies are now the official (CAF1) assemblies used for analysis. We also produced a reconciled assembly of Rhesus Macaque genome, and this assembly is available from our website http://www.genome.umd.edu. AVAILABILITY: The reconciliation software is available for download from http://www.genome.umd.edu/software.htm
Title: Evolution of genes and genomes on the Drosophila phylogenyClark AG , Eisen MB , Smith DR , Bergman CM , Oliver B , Markow TA , Kaufman TC , Kellis M , Gelbart W and MacCallum I <405 more author(s)> Clark AG , Eisen MB , Smith DR , Bergman CM , Oliver B , Markow TA , Kaufman TC , Kellis M , Gelbart W , Iyer VN , Pollard DA , Sackton TB , Larracuente AM , Singh ND , Abad JP , Abt DN , Adryan B , Aguade M , Akashi H , Anderson WW , Aquadro CF , Ardell DH , Arguello R , Artieri CG , Barbash DA , Barker D , Barsanti P , Batterham P , Batzoglou S , Begun D , Bhutkar A , Blanco E , Bosak SA , Bradley RK , Brand AD , Brent MR , Brooks AN , Brown RH , Butlin RK , Caggese C , Calvi BR , Bernardo de Carvalho A , Caspi A , Castrezana S , Celniker SE , Chang JL , Chapple C , Chatterji S , Chinwalla A , Civetta A , Clifton SW , Comeron JM , Costello JC , Coyne JA , Daub J , David RG , Delcher AL , Delehaunty K , Do CB , Ebling H , Edwards K , Eickbush T , Evans JD , Filipski A , Findeiss S , Freyhult E , Fulton L , Fulton R , Garcia AC , Gardiner A , Garfield DA , Garvin BE , Gibson G , Gilbert D , Gnerre S , Godfrey J , Good R , Gotea V , Gravely B , Greenberg AJ , Griffiths-Jones S , Gross S , Guigo R , Gustafson EA , Haerty W , Hahn MW , Halligan DL , Halpern AL , Halter GM , Han MV , Heger A , Hillier L , Hinrichs AS , Holmes I , Hoskins RA , Hubisz MJ , Hultmark D , Huntley MA , Jaffe DB , Jagadeeshan S , Jeck WR , Johnson J , Jones CD , Jordan WC , Karpen GH , Kataoka E , Keightley PD , Kheradpour P , Kirkness EF , Koerich LB , Kristiansen K , Kudrna D , Kulathinal RJ , Kumar S , Kwok R , Lander E , Langley CH , Lapoint R , Lazzaro BP , Lee SJ , Levesque L , Li R , Lin CF , Lin MF , Lindblad-Toh K , Llopart A , Long M , Low L , Lozovsky E , Lu J , Luo M , Machado CA , Makalowski W , Marzo M , Matsuda M , Matzkin L , McAllister B , McBride CS , McKernan B , McKernan K , Mendez-Lago M , Minx P , Mollenhauer MU , Montooth K , Mount SM , Mu X , Myers E , Negre B , Newfeld S , Nielsen R , Noor MA , O'Grady P , Pachter L , Papaceit M , Parisi MJ , Parisi M , Parts L , Pedersen JS , Pesole G , Phillippy AM , Ponting CP , Pop M , Porcelli D , Powell JR , Prohaska S , Pruitt K , Puig M , Quesneville H , Ram KR , Rand D , Rasmussen MD , Reed LK , Reenan R , Reily A , Remington KA , Rieger TT , Ritchie MG , Robin C , Rogers YH , Rohde C , Rozas J , Rubenfield MJ , Ruiz A , Russo S , Salzberg SL , Sanchez-Gracia A , Saranga DJ , Sato H , Schaeffer SW , Schatz MC , Schlenke T , Schwartz R , Segarra C , Singh RS , Sirot L , Sirota M , Sisneros NB , Smith CD , Smith TF , Spieth J , Stage DE , Stark A , Stephan W , Strausberg RL , Strempel S , Sturgill D , Sutton G , Sutton GG , Tao W , Teichmann S , Tobari YN , Tomimura Y , Tsolas JM , Valente VL , Venter E , Venter JC , Vicario S , Vieira FG , Vilella AJ , Villasante A , Walenz B , Wang J , Wasserman M , Watts T , Wilson D , Wilson RK , Wing RA , Wolfner MF , Wong A , Wong GK , Wu CI , Wu G , Yamamoto D , Yang HP , Yang SP , Yorke JA , Yoshida K , Zdobnov E , Zhang P , Zhang Y , Zimin AV , Baldwin J , Abdouelleil A , Abdulkadir J , Abebe A , Abera B , Abreu J , Acer SC , Aftuck L , Alexander A , An P , Anderson E , Anderson S , Arachi H , Azer M , Bachantsang P , Barry A , Bayul T , Berlin A , Bessette D , Bloom T , Blye J , Boguslavskiy L , Bonnet C , Boukhgalter B , Bourzgui I , Brown A , Cahill P , Channer S , Cheshatsang Y , Chuda L , Citroen M , Collymore A , Cooke P , Costello M , D'Aco K , Daza R , De Haan G , DeGray S , DeMaso C , Dhargay N , Dooley K , Dooley E , Doricent M , Dorje P , Dorjee K , Dupes A , Elong R , Falk J , Farina A , Faro S , Ferguson D , Fisher S , Foley CD , Franke A , Friedrich D , Gadbois L , Gearin G , Gearin CR , Giannoukos G , Goode T , Graham J , Grandbois E , Grewal S , Gyaltsen K , Hafez N , Hagos B , Hall J , Henson C , Hollinger A , Honan T , Huard MD , Hughes L , Hurhula B , Husby ME , Kamat A , Kanga B , Kashin S , Khazanovich D , Kisner P , Lance K , Lara M , Lee W , Lennon N , Letendre F , LeVine R , Lipovsky A , Liu X , Liu J , Liu S , Lokyitsang T , Lokyitsang Y , Lubonja R , Lui A , Macdonald P , Magnisalis V , Maru K , Matthews C , McCusker W , McDonough S , Mehta T , Meldrim J , Meneus L , Mihai O , Mihalev A , Mihova T , Mittelman R , Mlenga V , Montmayeur A , Mulrain L , Navidi A , Naylor J , Negash T , Nguyen T , Nguyen N , Nicol R , Norbu C , Norbu N , Novod N , O'Neill B , Osman S , Markiewicz E , Oyono OL , Patti C , Phunkhang P , Pierre F , Priest M , Raghuraman S , Rege F , Reyes R , Rise C , Rogov P , Ross K , Ryan E , Settipalli S , Shea T , Sherpa N , Shi L , Shih D , Sparrow T , Spaulding J , Stalker J , Stange-Thomann N , Stavropoulos S , Stone C , Strader C , Tesfaye S , Thomson T , Thoulutsang Y , Thoulutsang D , Topham K , Topping I , Tsamla T , Vassiliev H , Vo A , Wangchuk T , Wangdi T , Weiand M , Wilkinson J , Wilson A , Yadav S , Young G , Yu Q , Zembek L , Zhong D , Zimmer A , Zwirko Z , Alvarez P , Brockman W , Butler J , Chin C , Grabherr M , Kleber M , Mauceli E , MacCallum I (- 405) Ref: Nature, 450 :203, 2007 : PubMed Abstract ESTHER: Clark_2007_Nature_450_203 PubMedSearch: Clark 2007 Nature 450 203 PubMedID: 17994087 Gene_locus related to this paper: droan-ACHE ,
droan-b3lx10 ,
droan-b3lx75 ,
droan-b3lxv7 ,
droan-b3ly87 ,
droan-b3lyh4 ,
droan-b3lyh5 ,
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droan-b3lz72 ,
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dromo-b4k6a7 ,
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dromo-b4kd55.1 ,
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drosi-b4qzn8 ,
drosi-b4qzp2 ,
drosi-b4qzp3 ,
drosi-b4qzp4 ,
drosi-b4qzp5 ,
drosi-b4qzp6 ,
drosi-b4qzp7 ,
drosi-b4r1a4 ,
drosi-b4r025 ,
drosi-b4r207 ,
drosi-b4r662 ,
drosi-este6 ,
drosi-q670k8 ,
drovi-ACHE ,
drovi-b4lev2 ,
drovi-b4lf33 ,
drovi-b4lf51 ,
drovi-b4lg54 ,
drovi-b4lg72 ,
drovi-b4lgc6 ,
drovi-b4lgd5 ,
drovi-b4lgg0 ,
drovi-b4lgk5 ,
drovi-b4lgn2 ,
drovi-b4lh17 ,
drovi-b4lh18 ,
drovi-b4lk43 ,
drovi-b4ll59 ,
drovi-b4ll60 ,
drovi-b4llm5 ,
drovi-b4lln3 ,
drovi-b4lmk4 ,
drovi-b4lmp0 ,
drovi-b4lnr4 ,
drovi-b4lp47 ,
drovi-b4lpd0 ,
drovi-b4lps0 ,
drovi-b4lqc6 ,
drovi-b4lr00 ,
drovi-b4lrp6 ,
drovi-b4lrw2 ,
drovi-b4lse7 ,
drovi-b4lse9 ,
drovi-b4lsf0 ,
drovi-b4lsn0 ,
drovi-b4lsq5 ,
drovi-b4lt32 ,
drovi-b4ltr1 ,
drovi-b4lui7 ,
drovi-b4lui9 ,
drovi-b4luj8 ,
drovi-b4luk0 ,
drovi-b4luk3 ,
drovi-b4luk8 ,
drovi-b4luk9 ,
drovi-b4lul0 ,
drovi-b4lve2 ,
drovi-b4lxi9 ,
drovi-b4lxj8 ,
drovi-b4lyf3 ,
drovi-b4lyq2 ,
drovi-b4lyq3 ,
drovi-b4lz07 ,
drovi-b4lz13 ,
drovi-b4lz14 ,
drovi-b4lz15 ,
drovi-b4m0j7 ,
drovi-b4m0s0 ,
drovi-b4m2b6 ,
drovi-b4m4h7 ,
drovi-b4m4h8 ,
drovi-b4m4i0 ,
drovi-b4m4i2 ,
drovi-b4m4i3.A ,
drovi-b4m4i3.B ,
drovi-b4m4i4 ,
drovi-b4m4i5 ,
drovi-b4m4i6 ,
drovi-b4m4i7 ,
drovi-b4m4i8 ,
drovi-b4m4i9 ,
drovi-b4m4j2 ,
drovi-b4m5a0 ,
drovi-b4m5a1 ,
drovi-b4m5a2 ,
drovi-b4m6b9 ,
drovi-b4m7k9 ,
drovi-b4m9g9 ,
drovi-b4m9h0 ,
drovi-b4m564 ,
drovi-b4m599 ,
drovi-b4m918 ,
drovi-b4mb87 ,
drovi-b4mc71 ,
drovi-b4mfa4 ,
drowi-ACHE ,
drowi-b4mjb9 ,
drowi-b4mkt7 ,
drowi-b4mlc1 ,
drowi-b4mp68 ,
drowi-b4mqe9 ,
drowi-b4mqf0.2 ,
drowi-b4mqf1 ,
drowi-b4mqf3 ,
drowi-b4mqf4 ,
drowi-b4mqf5 ,
drowi-b4mqq6 ,
drowi-b4mrd1 ,
drowi-b4mrk3 ,
drowi-b4mtl5 ,
drowi-b4mug2 ,
drowi-b4muj8 ,
drowi-b4mv18 ,
drowi-b4mw32 ,
drowi-b4mw85 ,
drowi-b4mwp2 ,
drowi-b4mwp6 ,
drowi-b4mwq5 ,
drowi-b4mwr0 ,
drowi-b4mwr8 ,
drowi-b4mwr9 ,
drowi-b4mwt1 ,
drowi-b4mwz7 ,
drowi-b4mxn5 ,
drowi-b4my54 ,
drowi-b4myg1 ,
drowi-b4myh5 ,
drowi-b4n0d4 ,
drowi-b4n1a7 ,
drowi-b4n1c8 ,
drowi-b4n3s9 ,
drowi-b4n3x7 ,
drowi-b4n4x9 ,
drowi-b4n4y0 ,
drowi-b4n6m1 ,
drowi-b4n6n0 ,
drowi-b4n6n7 ,
drowi-b4n6u6 ,
drowi-b4n7s6 ,
drowi-b4n7s7 ,
drowi-b4n7s8 ,
drowi-b4n899.1 ,
drowi-b4n8a1 ,
drowi-b4n8a2 ,
drowi-b4n8a3 ,
drowi-b4n8a4 ,
drowi-b4n8a9 ,
drowi-b4n023 ,
drowi-b4n075 ,
drowi-b4n543 ,
drowi-b4n888 ,
drowi-b4n889 ,
drowi-b4n891 ,
drowi-b4n893 ,
drowi-b4n895 ,
drowi-b4n897 ,
drowi-b4n898 ,
drowi-b4n899.2 ,
drowi-b4nae3 ,
drowi-b4ner8 ,
drowi-b4ng76 ,
drowi-b4nga7 ,
drowi-b4ngb5 ,
drowi-b4nhz9 ,
drowi-b4nj18 ,
drowi-b4nj19 ,
drowi-b4nja7 ,
drowi-b4nja8 ,
drowi-b4nja9 ,
drowi-b4njk8 ,
drowi-b4nkc8 ,
drowi-b4nky0 ,
drowi-b4nl36 ,
drowi-b4nm27 ,
drowi-b4nn59 ,
drowi-b4nnc1 ,
drowi-b4nng1 ,
drowi-b4nng2 ,
droya-ACHE ,
droya-aes04 ,
droya-b4itg2 ,
droya-b4itg6 ,
droya-b4itu9 ,
droya-b4iuv4 ,
droya-b4iuv5 ,
droya-b4nxe6 ,
droya-b4nxg5 ,
droya-b4nxg6 ,
droya-b4nxg8 ,
droya-b4nxw4 ,
droya-b4ny57 ,
droya-b4ny58 ,
droya-b4ny86 ,
droya-b4nzz8 ,
droya-b4p0b5 ,
droya-b4p0q9 ,
droya-b4p0r0 ,
droya-b4p0r7 ,
droya-b4p0r8 ,
droya-b4p0r9 ,
droya-b4p0s0 ,
droya-b4p0s2 ,
droya-b4p0t0 ,
droya-b4p0t1 ,
droya-b4p3h4 ,
droya-b4p3x8 ,
droya-b4p5g8 ,
droya-b4p6c9 ,
droya-b4p6l9 ,
droya-b4p6r1 ,
droya-b4p6r2 ,
droya-b4p7u4 ,
droya-b4p8w7 ,
droya-b4p023 ,
droya-b4p241 ,
droya-b4p774 ,
droya-b4pat9 ,
droya-b4pbl1 ,
droya-b4pd22 ,
droya-b4pd70 ,
droya-b4pdm8 ,
droya-b4pet9 ,
droya-b4pff9 ,
droya-b4pga7 ,
droya-b4pgu0 ,
droya-b4pig3 ,
droya-b4pjt8 ,
droya-b4pka2 ,
droya-b4plh2 ,
droya-b4pma3 ,
droya-b4pmv3 ,
droya-b4pmv4 ,
droya-b4pmv5 ,
droya-b4pn92 ,
droya-b4pp65 ,
droya-b4ppc5 ,
droya-b4ppc6 ,
droya-b4ppc7 ,
droya-b4ppc8 ,
droya-b4pq03 ,
droya-b4prg6B ,
droya-b4prg9 ,
droya-b4prh3 ,
droya-b4prh4 ,
droya-b4prh6 ,
droya-b4prh7 ,
droya-b4psz8 ,
droya-b4psz9 ,
droya-b4pv22 ,
droya-b4q0g5 ,
droya-b4q246 ,
droya-EST6 ,
droya-q71d76 ,
drowi-b4n7m9 ,
drope-b4gkk1 ,
droer-b3n5s3 ,
drose-b4i1w5 ,
drowi-a0a0q9x0t3 ,
drogr-b4jvm7 ,
dromo-b4ku70 ,
drovi-b4mcn9 ,
drovi-b4lty2 ,
drogr-b4jdu1 ,
drovi-a0a0q9wiq8 ,
dromo-b4kf70 ,
drosi-b2zi86 ,
droya-b4p2y4 ,
drose-b2zic5 ,
droer-b3n895 Abstract
Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species.
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