Gene_locus Report for: dyafd-c6w6a8 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative acetyl xylan esterase
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Bacteria: N E > FCB group: N E > Bacteroidetes/Chlorobi group: N E > Bacteroidetes: N E > Cytophagia: N E > Cytophagales: N E > Cytophagaceae: N E > Dyadobacter: N E > Dyadobacter fermentans: N E 6_AlphaBeta_hydrolase :
dyafd-c6vtn9 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative uncharacterized protein ,
dyafd-c6vuf1 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative uncharacterized protein ,
dyafd-c6vx42 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Alpha/beta hydrolase fold protein ,
dyafd-c6vyy9 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Alpha/beta hydrolase fold protein ,
dyafd-c6w1q5 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative uncharacterized protein .
A85-EsteraseD-FGH :
dyafd-c6vy00 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative esterase .
A85-Feruloyl-Esterase :
dyafd-c6vtl2 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative esterase ,
dyafd-c6vx95 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative esterase ,
dyafd-c6vyc2 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative esterase .
A85-IroE-IroD-Fes-Yiel :
dyafd-c6vy05 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative esterase ,
dyafd-c6vy98 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative esterase ,
dyafd-c6vz95 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative esterase ,
dyafd-c6vz96 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative esterase ,
dyafd-c6w5n0 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative uncharacterized protein ,
dyafd-c6w5s2 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative esterase .
abh_upf0017 :
dyafd-c6w4r6 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Alpha/beta hydrolase fold protein .
Acetyl-esterase_deacetylase :
dyafd-c6w605 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Acetyl xylan esterase .
BD-FAE :
dyafd-c6w0j7 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative uncharacterized protein .
Carb_B_Bacteria :
dyafd-c6w743 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Carboxylesterase type B .
Chlorophyllase :
dyafd-c6w248 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114). Uncharacterized protein .
DPP4N_Peptidase_S9 :
dyafd-c6vv37 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Peptidase S9B dipeptidylpeptidase IV domain protein ,
dyafd-c6w773 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Peptidase S9 prolyl oligopeptidase active site domain protein .
Duf_900 :
dyafd-c6w6z4 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative uncharacterized protein .
Fungal-Bact_LIP :
dyafd-c6w7i5 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative uncharacterized protein .
Glucuronoyl_esterase :
dyafd-c6vy01 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative acetyl xylan esterase ,
dyafd-c6w6k0 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative acetyl xylan esterase .
Haloperoxidase :
dyafd-c6vx54 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Alpha/beta hydrolase fold protein ,
dyafd-c6w325 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Alpha/beta hydrolase fold protein .
Hormone-sensitive_lipase_like :
dyafd-c6w724 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114). Alpha/beta hydrolase fold-3 domain protein .
LYsophospholipase_carboxylesterase :
dyafd-c6vye5 .
Monoglyceridelipase_lysophospholip :
dyafd-c6vw49 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative uncharacterized protein .
Pectin_methylesterase :
dyafd-c6w3h8 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Acetyl xylan esterase .
PhoPQ_related :
dyafd-c6w7f1 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Putative uncharacterized protein .
Proline_iminopeptidase :
dyafd-c6vux0 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114). Alpha/beta hydrolase fold protein ,
dyafd-c6vux5 Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114). Alpha/beta hydrolase fold protein Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: dyafd-c6w6a8 Colored MSA for Glucuronoyl_esterase (raw)
MTALTNHHMKKTAILCMLLAAPFWAAFAQNYDESKVPHYTLPDVLKTASG
KTIRSEEKWEKLRRPEVLRLFEDHIYGQMPVGYDSIRYALTEDDRPEMDG
KAVLKQIGVTVFRNGNSVQINVVLFVPTQAKKPVPVFLLINNRGKDLTDP
TRAKKSEFWPAEMVVDSGFAIAAFHVSDLAPDNKDTYMTGVLQKLYPEQL
KKDNGMKAIGAWAWGASRVMDYFGTDKDIDSKKVIVVGHSRGGKTSLWAA
AQDRRFAACVTNCSGNTGAALARRQFGERISRINTTFPHWFNNNYKKYND
KENALPVDQHMLIALIAPRPVYATNASKDLWADPKGTFLAVKAAEPVYAL
YGVKPELPKEMPGIDMPVIGPHFGYHNHEGEHNMTAYDWDKFIRFAKQF
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M T A L T N H H M K K T A I L C M L L A A P F W A A F A Q N Y D E S K V P H Y T L P D V L K T A S G K T I R S E E K W E K L R R P E V L R L F E D H I Y G Q M P V G Y D S I R Y A L T E D D R P E M D G K A V L K Q I G V T V F R N G N S V Q I N V V L F V P T Q A K K P V P V F L L I N N R G K D L T D P T R A K K S E F W P A E M V V D S G F A I A A F H V S D L A P D N K D T Y M T G V L Q K L Y P E Q L K K D N G M K A I G A W A W G A S R V M D Y F G T D K D I D S K K V I V V G H S R G G K T S L W A A A Q D R R F A A C V T N C S G N T G A A L A R R Q F G E R I S R I N T T F P H W F N N N Y K K Y N D K E N A L P V D Q H M L I A L I A P R P V Y A T N A S K D L W A D P K G T F L A V K A A E P V Y A L Y G V K P E L P K E M P G I D M P V I G P H F G Y H N H E G E H N M T A Y D W D K F I R F A K Q F
Reference
Title: Complete genome sequence of Dyadobacter fermentans type strain (NS114)Lang E , Lapidus A , Chertkov O , Brettin T , Detter JC , Han C , Copeland A , Glavina Del Rio T , Nolan M and Klenk HP <26 more author(s)> Lang E , Lapidus A , Chertkov O , Brettin T , Detter JC , Han C , Copeland A , Glavina Del Rio T , Nolan M , Chen F , Lucas S , Tice H , Cheng JF , Land M , Hauser L , Chang YJ , Jeffries CD , Kopitz M , Bruce D , Goodwin L , Pitluck S , Ovchinnikova G , Pati A , Ivanova N , Mavrommatis K , Chen A , Palaniappan K , Chain P , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Goker M , Rohde M , Kyrpides NC , Klenk HP (- 26) Ref: Stand Genomic Sci, 1 :133, 2009 : PubMed Abstract ESTHER: Lang_2009_Stand.Genomic.Sci_1_133 PubMedSearch: Lang 2009 Stand.Genomic.Sci 1 133 PubMedID: 21304649 Gene_locus related to this paper: dyafd-c6vtl2 ,
dyafd-c6vtn9 ,
dyafd-c6vuf1 ,
dyafd-c6vv37 ,
dyafd-c6vw49 ,
dyafd-c6vx42 ,
dyafd-c6vx54 ,
dyafd-c6vx95 ,
dyafd-c6vy00 ,
dyafd-c6vy01 ,
dyafd-c6vy05 ,
dyafd-c6vy98 ,
dyafd-c6vyc2 ,
dyafd-c6vyy9 ,
dyafd-c6vz95 ,
dyafd-c6vz96 ,
dyafd-c6w0j7 ,
dyafd-c6w1q5 ,
dyafd-c6w3h8 ,
dyafd-c6w4r6 ,
dyafd-c6w5n0 ,
dyafd-c6w5s2 ,
dyafd-c6w6a8 ,
dyafd-c6w6k0 ,
dyafd-c6w6z4 ,
dyafd-c6w7f1 ,
dyafd-c6w7i5 ,
dyafd-c6w325 ,
dyafd-c6w605 ,
dyafd-c6w743 ,
dyafd-c6w773 ,
dyafd-c6vux0 ,
dyafd-c6vux5 ,
dyafd-c6w724 ,
dyafd-c6w248 Abstract
Dyadobacter fermentans (Chelius and Triplett, 2000) is the type species of the genus Dyadobacter. It is of phylogenetic interest because of its location in the Cytophagaceae, a very diverse family within the order 'Sphingobacteriales'. D. fermentans has a mainly respiratory metabolism, stains Gram-negative, is non-motile and oxidase and catalase positive. It is characterized by the production of cell filaments in aging cultures, a flexirubin-like pigment and its ability to ferment glucose, which is almost unique in the aerobically living members of this taxonomically difficult family. Here we describe the features of this organism, together with the complete genome sequence, and its annotation. This is the first complete genome sequence of the sphingobacterial genus Dyadobacter, and this 6,967,790 bp long single replicon genome with its 5804 protein-coding and 50 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
Other Papers
Phospholipase/Carboxylesterase from Dyadobacter fermentans DSM 18053