Escherichia coli, Escherichia fergusonii, Escherichia albertii, hydrolase (dlh) putative carboxymethylenebutenolidase ysgA (EC 3.1.1.45)
Other strains: Escherichia coli (strains O6\; O157:H7\/UTI89\/EC4486\/EC4196\/EC4076\/EC508\/EC4501\/TW14588\/EC4401\/EC4113\/TW14359\/EC4115\; NC101\; MS 119-7\; FVEC1302\; B088\; W\; E110019\; 101-1\; MS 182-1\; MS 200-1\; MS 84-1\; 1_1_43\; 3_2_53FAA\; MS 107-1\; MS 185-1\; MS 198-1\; MS 116-1\; MS 175-1\; 83972\; MS 115-1\; MS 45-1\; MS 21-1\; MS 69-1\; MS 187-1\; O7:K1\/IAI39\/ExPEC\; O81\/ED1a\; O1:K1\/APEC\; O55:H7\/CB9615\/EPEC\; F11\; B185\; B7A\; B171\; 53638\; FVEC1412\; KO11\; MS 196-1\; B354\; E22\; EC869\; B\/BL21-DE3\; O127:H6\/E2348\/69\/EPEC\; O17:K52:H18\/UMN026\/ExPEC\; B\/REL606\; O111:H-11128\/EHEC\; ATCC33849\/DSM4235\/NCIB12045\/K12DH1\; O8\/IAI1\; O103:H2\/12009\/EHEC\; O6:K15:H31\/536\/UPEC\; O45:K1\/S88\/ExPEC\; K12\/MC4100\/BW2952\; O139:H28\/E24377A\/ETEC\; K12\/DH10B\; O18:K1:H7\/IHE3034\/ExPEC\; O9:H4\/HS\; O26:H11\/11368\/EHEC\; O150:H5\/SE15\; ATCC8739\/DSM1576\/Crooks\; SMS-3-5\/SECEC\; SE11\; 55989\; O44:H18\/042\/EAEC) Escherichia fergusonii (ATCC35469\/DSM 13698\/CDC 0568-73) Escherichia albertii TW07627 || The enterohaemorrhagic Escherichia coli O157:H7 corresponding gene is Q8X8L4 DLHH_ECO57 Perna et al Nature 409:529-533(2001) || Escherichia coli O6 putative carboxymethylenebutenolidase Q8FBK1 AE016770
MATTQQSGFA PAASPLASTI VQTPDDAIVA GFTSIPSQGD NMPAYHARPK QSDGPLPVVI VVQEIFGVHE HIRDICRRLA LEGYLAIAPE LYFREGDPND FADIPTLLSG LVAKVPDSQV LADLDHVASW ASRNGGDVHR LMITGFCWGG RITWLYAAHN PQLKAAVAWY GKLTGDKSLN SPKQPVDIAT DLNAPILGLY GGQDNSIPQE SVETMRQALR AANAKAEIIV YPDAGHAFNA DYRPSYHAAS AEDGWQRMLE WFKQYGGKKS L
Title : Derivation of Escherichia coli O157:H7 from its O55:H7 precursor - Zhou_2010_PLoS.One_5_e8700 |
Author(s) : Zhou Z , Li X , Liu B , Beutin L , Xu J , Ren Y , Feng L , Lan R , Reeves PR , Wang L |
Ref : PLoS ONE , 5 :e8700 , 2010 |
Abstract : Zhou_2010_PLoS.One_5_e8700 |
ESTHER : Zhou_2010_PLoS.One_5_e8700 |
PubMedSearch : Zhou_2010_PLoS.One_5_e8700 |
PubMedID: 20090843 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR |
Title : Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2 - Toh_2010_J.Bacteriol_192_1165 |
Author(s) : Toh H , Oshima K , Toyoda A , Ogura Y , Ooka T , Sasamoto H , Park SH , Iyoda S , Kurokawa K , Morita H , Itoh K , Taylor TD , Hayashi T , Hattori M |
Ref : Journal of Bacteriology , 192 :1165 , 2010 |
Abstract : Toh_2010_J.Bacteriol_192_1165 |
ESTHER : Toh_2010_J.Bacteriol_192_1165 |
PubMedSearch : Toh_2010_J.Bacteriol_192_1165 |
PubMedID: 20008064 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR , ecos5-d2nhh3 , yerpe-YBTT , ecolx-f4suw9 |
Title : Genome sequences of Escherichia coli B strains REL606 and BL21(DE3) - Jeong_2009_J.Mol.Biol_394_644 |
Author(s) : Jeong H , Barbe V , Lee CH , Vallenet D , Yu DS , Choi SH , Couloux A , Lee SW , Yoon SH , Cattolico L , Hur CG , Park HS , Segurens B , Kim SC , Oh TK , Lenski RE , Studier FW , Daegelen P , Kim JF |
Ref : Journal of Molecular Biology , 394 :644 , 2009 |
Abstract : Jeong_2009_J.Mol.Biol_394_644 |
ESTHER : Jeong_2009_J.Mol.Biol_394_644 |
PubMedSearch : Jeong_2009_J.Mol.Biol_394_644 |
PubMedID: 19786035 |
Gene_locus related to this paper: eco57-b3a913 , ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR |
Title : A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis - Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713 |
Author(s) : Leopold SR , Magrini V , Holt NJ , Shaikh N , Mardis ER , Cagno J , Ogura Y , Iguchi A , Hayashi T , Mellmann A , Karch H , Besser TE , Sawyer SA , Whittam TS , Tarr PI |
Ref : Proc Natl Acad Sci U S A , 106 :8713 , 2009 |
Abstract : Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713 |
ESTHER : Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713 |
PubMedSearch : Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713 |
PubMedID: 19439656 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , neucr-q7sha3 |
Title : Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348\/69 - Iguchi_2009_J.Bacteriol_191_347 |
Author(s) : Iguchi A , Thomson NR , Ogura Y , Saunders D , Ooka T , Henderson IR , Harris D , Asadulghani M , Kurokawa K , Dean P , Kenny B , Quail MA , Thurston S , Dougan G , Hayashi T , Parkhill J , Frankel G |
Ref : Journal of Bacteriology , 191 :347 , 2009 |
Abstract : Iguchi_2009_J.Bacteriol_191_347 |
ESTHER : Iguchi_2009_J.Bacteriol_191_347 |
PubMedSearch : Iguchi_2009_J.Bacteriol_191_347 |
PubMedID: 18952797 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR |
Title : Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12 - Ferenci_2009_J.Bacteriol_191_4025 |
Author(s) : Ferenci T , Zhou Z , Betteridge T , Ren Y , Liu Y , Feng L , Reeves PR , Wang L |
Ref : Journal of Bacteriology , 191 :4025 , 2009 |
Abstract : Ferenci_2009_J.Bacteriol_191_4025 |
ESTHER : Ferenci_2009_J.Bacteriol_191_4025 |
PubMedSearch : Ferenci_2009_J.Bacteriol_191_4025 |
PubMedID: 19376874 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR |
Title : The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse - Durfee_2008_J.Bacteriol_190_2597 |
Author(s) : Durfee T , Nelson R , Baldwin S , Plunkett G, 3rd , Burland V , Mau B , Petrosino JF , Qin X , Muzny DM , Ayele M , Gibbs RA , Csorgo B , Posfai G , Weinstock GM , Blattner FR |
Ref : Journal of Bacteriology , 190 :2597 , 2008 |
Abstract : Durfee_2008_J.Bacteriol_190_2597 |
ESTHER : Durfee_2008_J.Bacteriol_190_2597 |
PubMedSearch : Durfee_2008_J.Bacteriol_190_2597 |
PubMedID: 18245285 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR |
Title : Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult - Oshima_2008_DNA.Res_15_375 |
Author(s) : Oshima K , Toh H , Ogura Y , Sasamoto H , Morita H , Park SH , Ooka T , Iyoda S , Taylor TD , Hayashi T , Itoh K , Hattori M |
Ref : DNA Research , 15 :375 , 2008 |
Abstract : Oshima_2008_DNA.Res_15_375 |
ESTHER : Oshima_2008_DNA.Res_15_375 |
PubMedSearch : Oshima_2008_DNA.Res_15_375 |
PubMedID: 18931093 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR |
Title : Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5 - Fricke_2008_J.Bacteriol_190_6779 |
Author(s) : Fricke WF , Wright MS , Lindell AH , Harkins DM , Baker-Austin C , Ravel J , Stepanauskas R |
Ref : Journal of Bacteriology , 190 :6779 , 2008 |
Abstract : Fricke_2008_J.Bacteriol_190_6779 |
ESTHER : Fricke_2008_J.Bacteriol_190_6779 |
PubMedSearch : Fricke_2008_J.Bacteriol_190_6779 |
PubMedID: 18708504 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-estX , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , ecosm-b1lhu2 |
Title : The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates - Rasko_2008_J.Bacteriol_190_6881 |
Author(s) : Rasko DA , Rosovitz MJ , Myers GS , Mongodin EF , Fricke WF , Gajer P , Crabtree J , Sebaihia M , Thomson NR , Chaudhuri R , Henderson IR , Sperandio V , Ravel J |
Ref : Journal of Bacteriology , 190 :6881 , 2008 |
Abstract : Rasko_2008_J.Bacteriol_190_6881 |
ESTHER : Rasko_2008_J.Bacteriol_190_6881 |
PubMedSearch : Rasko_2008_J.Bacteriol_190_6881 |
PubMedID: 18676672 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-Z2445 , ecoli-YfhR |
Title : The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes - Johnson_2007_J.Bacteriol_189_3228 |
Author(s) : Johnson TJ , Kariyawasam S , Wannemuehler Y , Mangiamele P , Johnson SJ , Doetkott C , Skyberg JA , Lynne AM , Johnson JR , Nolan LK |
Ref : Journal of Bacteriology , 189 :3228 , 2007 |
Abstract : Johnson_2007_J.Bacteriol_189_3228 |
ESTHER : Johnson_2007_J.Bacteriol_189_3228 |
PubMedSearch : Johnson_2007_J.Bacteriol_189_3228 |
PubMedID: 17293413 |
Gene_locus related to this paper: ecok1-a1acc0 , ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z1930 , ecoli-YfhR , ecout-q1r7l6 , yerpe-YBTT |
Title : Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536 - Hochhut_2006_Mol.Microbiol_61_584 |
Author(s) : Hochhut B , Wilde C , Balling G , Middendorf B , Dobrindt U , Brzuszkiewicz E , Gottschalk G , Carniel E , Hacker J |
Ref : Molecular Microbiology , 61 :584 , 2006 |
Abstract : Hochhut_2006_Mol.Microbiol_61_584 |
ESTHER : Hochhut_2006_Mol.Microbiol_61_584 |
PubMedSearch : Hochhut_2006_Mol.Microbiol_61_584 |
PubMedID: 16879640 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C2451 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-IROD , ecoli-IROE , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , ecolx-q707d7 , yerpe-YBTT |
Title : Escherichia coli K-12: a cooperatively developed annotation snapshot--2005 - Riley_2006_Nucleic.Acids.Res_34_1 |
Author(s) : Riley M , Abe T , Arnaud MB , Berlyn MK , Blattner FR , Chaudhuri RR , Glasner JD , Horiuchi T , Keseler IM , Kosuge T , Mori H , Perna NT , Plunkett G, 3rd , Rudd KE , Serres MH , Thomas GH , Thomson NR , Wishart D , Wanner BL |
Ref : Nucleic Acids Research , 34 :1 , 2006 |
Abstract : Riley_2006_Nucleic.Acids.Res_34_1 |
ESTHER : Riley_2006_Nucleic.Acids.Res_34_1 |
PubMedSearch : Riley_2006_Nucleic.Acids.Res_34_1 |
PubMedID: 16397293 |
Gene_locus related to this paper: ecoli-dlhh , ecoli-pldb |
Title : Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110 - Hayashi_2006_Mol.Syst.Biol_2_2006 0007 |
Author(s) : Hayashi K , Morooka N , Yamamoto Y , Fujita K , Isono K , Choi S , Ohtsubo E , Baba T , Wanner BL , Mori H , Horiuchi T |
Ref : Mol Syst Biol , 2 :2006 0007 , 2006 |
Abstract : Hayashi_2006_Mol.Syst.Biol_2_2006 0007 |
ESTHER : Hayashi_2006_Mol.Syst.Biol_2_2006 0007 |
PubMedSearch : Hayashi_2006_Mol.Syst.Biol_2_2006 0007 |
PubMedID: 16738553 |
Gene_locus related to this paper: ecoli-Aes , ecoli-dlhh , ecoli-mhpc , ecoli-ycfp , ecoli-yeiG , ecoli-yhet , ecoli-yiel , ecoli-ypfh , ecoli-yqia |
Title : The complete genome sequence of Escherichia coli K-12 - Blattner_1997_Science_277_1453 |
Author(s) : Blattner FR , Plunkett G, 3rd , Bloch CA , Perna NT , Burland V , Riley M , Collado-Vides J , Glasner JD , Rode CK , Mayhew GF , Gregor J , Davis NW , Kirkpatrick HA , Goeden MA , Rose DJ , Mau B , Shao Y |
Ref : Science , 277 :1453 , 1997 |
Abstract : Blattner_1997_Science_277_1453 |
ESTHER : Blattner_1997_Science_277_1453 |
PubMedSearch : Blattner_1997_Science_277_1453 |
PubMedID: 9278503 |
Gene_locus related to this paper: ecoli-Aes , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR |