ecoli-rutD
Escherichia coli BchO gene protein rutD Pyrimidine utilization protein D ycdJ rarA
Comment
Other strains: Escherichia coli (strains O6:K15:H31\; 536 \/ UPEC\; B088\; O1:K1 \/ APEC\; O9:H4\/ HS\;O139:H28\/E24377A\/ETEC\; MS 45-1\; O157:H7\/EC4486\/EC4196\/EC4501\/EC4113\/TW14588\/EC4076\/EC4401\/EC869\/EC508\/TW14359\/EC4115\/1125\/1044\/EC1212\/EC4042\/EC4045\/EC4206\/LSU-61\/G5101\; O157:H- H 2687 493-89\; O55:H7 3256-97\; B7A\; 83972\; MS 198-1\; MS 182-1\; B171\; MS 84-1\; MS 119-7\; KO11\; MS 200-1\; W\; NC101\; MS 116-1\; MS 21-1\; FVEC1412\; MS 107-1\; B354\; 3_2_53FAA\; MS 196-1\; MS 175-1\; MS 187-1\; B185\; F11\; MS 185-1\; MS 69-1\; E22\; MS 115-1\; 101-1\; 53638\; E110019\; B\/BL21-DE3\; O17:K52:H18\/UMN026\/ExPEC\; ATCC33849\/DSM4235\/NCIB12045\/K12DH1\; ATCC8739\/DSM1576\/Crooks\; O127:H6\/E2348\/69\/EPEC\; 55989\; O18:K1:H7\/IHE3034\/ExPEC\; SMS-3-5\/SECEC\; O8\/IAI1\; O7:K1\/IAI39\/ExPEC\; K12\/MC4100\/BW2952\; O111:H-11128\/EHEC\; O103:H2\/12009\/EHEC\; O55:H7\/CB9615\/EPEC\; O81\/ED1a\; K12\/DH10B\; O150:H5\/SE15\; SE11\; B\/REL606\; O44:H18\/042\/EAEC\; O45:K1\/S88\/ExPEC\; O26:H11\/11368\/EHEC\; STEC_7v\; M863\; H120\; E1167\; OK1357\; MS 145-7\; ATCC 9905\; OR:K5:H- (strain ABU 83972)\; MS 153-1\; MS 16-3\; RN587\/1\; MS 60-1\; 2362-75\; O83:H1 (strain NRG 857C \/ AIEC)\; MS 57-2\; H252\; H263\; MS 110-3\; UM146\; WV_060327\; O55:H7 str. USDA 5905\; MS 85-1\; MS 124-1\; 1827-70\; O78:H11 (strain H10407 \/ ETEC)\; TA007\; MS 78-1\; H489\; E482\; E1520\; 3431\; ATCC 33849 \/ DSM 4235 \/ NCIB 12045 \/ K12\; MS 117-3\; MS 146-1\; E128010\; OK1180\; ATCC 55124 \/ KO11\; EPECa14\; EC4100B\; LT-68\; TW10509
Relationship
Molecular evidence
Database
P75895
Q8XAU7
C8TNB9
B7MIF6
D3H122
C6UFC0
B6I985
D2NGI6
B1X9D0
B7MTF2
B5YU51
D3QPK2
C8U5H1
C8UMM5
C4ZQD7
B7NLB7
B7M8Z4
B1LIZ6
D5CZG9
B7LFB9
B7UNZ2
B1IV88
C6UPN1
C9QZ67
B7N3G5
C6EHJ8
D7YAC7
D6I8S5
D6J8X7
D8A7Q0
E0IZ34
D8EB97
D7XIY6
Q8FJ43
Q1RDK8
Q0TJ58
A1A9R4
A7ZYW4
A7ZKB4
C3TF07
E1IPW9
E6BD27
E1J246
E3PJH8
E9TEF9
E9XMV3
P75895
Q8XAU7
C8TNB9
B7MIF6
D3H122
C6UFC0
B6I985
D2NGI6
B1X9D0
B7MTF2
B5YU51
D3QPK2
C8U5H1
C8UMM5
C4ZQD7
B7NLB7
B7M8Z4
B1LIZ6
D5CZG9
B7LFB9
B7UNZ2
B1IV88
C6UPN1
C9QZ67
B7N3G5
C6EHJ8
D7YAC7
D6I8S5
D6J8X7
D8A7Q0
E0IZ34
D8EB97
D7XIY6
Q8FJ43
Q1RDK8
Q0TJ58
A1A9R4
A7ZYW4
A7ZKB4
C3TF07
E1IPW9
E6BD27
E1J246
E3PJH8
E9TEF9
E9XMV3
P75895
Q8XAU7
C8TNB9
B7MIF6
D3H122
C6UFC0
B6I985
D2NGI6
B1X9D0
B7MTF2
B5YU51
D3QPK2
C8U5H1
C8UMM5
C4ZQD7
B7NLB7
B7M8Z4
B1LIZ6
D5CZG9
B7LFB9
B7UNZ2
B1IV88
C6UPN1
C9QZ67
B7N3G5
C6EHJ8
D7YAC7
D6I8S5
D6J8X7
D8A7Q0
E0IZ34
D8EB97
D7XIY6
Q8FJ43
Q1RDK8
Q0TJ58
A1A9R4
A7ZYW4
A7ZKB4
C3TF07
E1IPW9
E6BD27
E1J246
E3PJH8
E9TEF9
E9XMV3
P75895
Q8XAU7
C8TNB9
B7MIF6
D3H122
C6UFC0
B6I985
D2NGI6
B1X9D0
B7MTF2
B5YU51
D3QPK2
C8U5H1
C8UMM5
C4ZQD7
B7NLB7
B7M8Z4
B1LIZ6
D5CZG9
B7LFB9
B7UNZ2
B1IV88
C6UPN1
C9QZ67
B7N3G5
C6EHJ8
D7YAC7
D6I8S5
D6J8X7
D8A7Q0
E0IZ34
D8EB97
D7XIY6
Q8FJ43
Q1RDK8
Q0TJ58
A1A9R4
A7ZYW4
A7ZKB4
C3TF07
E1IPW9
E6BD27
E1J246
E3PJH8
E9TEF9
E9XMV3
P75895
Q8XAU7
C8TNB9
B7MIF6
D3H122
C6UFC0
B6I985
D2NGI6
B1X9D0
B7MTF2
B5YU51
D3QPK2
C8U5H1
C8UMM5
C4ZQD7
B7NLB7
B7M8Z4
B1LIZ6
D5CZG9
B7LFB9
B7UNZ2
B1IV88
C6UPN1
C9QZ67
B7N3G5
C6EHJ8
D7YAC7
D6I8S5
D6J8X7
D8A7Q0
E0IZ34
D8EB97
D7XIY6
Q8FJ43
Q1RDK8
Q0TJ58
A1A9R4
A7ZYW4
A7ZKB4
C3TF07
E1IPW9
E6BD27
E1J246
E3PJH8
E9TEF9
E9XMV3
Sequence
Peptide
MKLSLSPPPY ADAPVVVLIS GLGGSGSYWL PQLAVLEQEY QVVCYDQRGT GNNPDTLAED YSIAQMAAEL HQALVAAGIE HYAVVGHALG ALVGMQLALD YPASVTVLIS VNGWLRINAH TRRCFQVRER LLYSGGAQAW VEAQPLFLYP ADWMAARAPR LEAEDALALA HFQGKNNLLR RLNALKRADF SHHADRIRCP VQIICASDDL LVPTACSSEL HAALPDSQKM VMPYGGHACN VTDPETFNAL LLNGLASLLH HREAAL
References
| Title : Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes - Turner_2012_J.Ind.Microbiol.Biotechnol_39_629 |
| Author(s) : Turner PC , Yomano LP , Jarboe LR , York SW , Baggett CL , Moritz BE , Zentz EB , Shanmugam KT , Ingram LO |
| Ref : J Ind Microbiol Biotechnol , 39 :629 , 2012 |
| Abstract : Turner_2012_J.Ind.Microbiol.Biotechnol_39_629 |
| ESTHER : Turner_2012_J.Ind.Microbiol.Biotechnol_39_629 |
| PubMedSearch : Turner_2012_J.Ind.Microbiol.Biotechnol_39_629 |
| PubMedID: 22075923 |
| Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yeiG , ecoli-yhet , ecoli-yiel , ecoli-yqia , ecoli-YfhR |
| Title : A multi-faceted analysis of RutD reveals a novel family of alpha\/beta hydrolases - Knapik_2012_Proteins_80_2359 |
| Author(s) : Knapik AA , Petkowski JJ , Otwinowski Z , Cymborowski MT , Cooper DR , Majorek KA , Chruszcz M , Krajewska WM , Minor W |
| Ref : Proteins , 80 :2359 , 2012 |
| Abstract : Knapik_2012_Proteins_80_2359 |
| ESTHER : Knapik_2012_Proteins_80_2359 |
| PubMedSearch : Knapik_2012_Proteins_80_2359 |
| PubMedID: 22641504 |
| Gene_locus related to this paper: ecoli-rutD |
| Title : Complete genome sequence of adherent invasive Escherichia coli UM146 isolated from Ileal Crohn's disease biopsy tissue - Krause_2011_J.Bacteriol_193_583 |
| Author(s) : Krause DO , Little AC , Dowd SE , Bernstein CN |
| Ref : Journal of Bacteriology , 193 :583 , 2011 |
| Abstract : Krause_2011_J.Bacteriol_193_583 |
| ESTHER : Krause_2011_J.Bacteriol_193_583 |
| PubMedSearch : Krause_2011_J.Bacteriol_193_583 |
| PubMedID: 21075930 |
| Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-entf , ecoli-IROD , ecoli-IROE , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yeiG , ecoli-YFBB , ecoli-yiel , ecoli-yqia , ecoli-YfhR , ecout-q1r7l6 |
| Title : Draft genome sequences of six Escherichia coli isolates from the stepwise model of emergence of Escherichia coli O157:H7 - Rump_2011_J.Bacteriol_193_2058 |
| Author(s) : Rump LV , Strain EA , Cao G , Allard MW , Fischer M , Brown EW , Gonzalez-Escalona N |
| Ref : Journal of Bacteriology , 193 :2058 , 2011 |
| Abstract : Rump_2011_J.Bacteriol_193_2058 |
| ESTHER : Rump_2011_J.Bacteriol_193_2058 |
| PubMedSearch : Rump_2011_J.Bacteriol_193_2058 |
| PubMedID: 21317333 |
| Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-yafa , ecoli-ycfp , ecoli-yeiG , ecoli-yhet , ecoli-yqia , ecoli-Z0347 , ecoli-Z1930 , ecoli-Z2445 |
| Title : Comparison of sequence reads obtained from three next-generation sequencing platforms - Suzuki_2011_PLoS.One_6_e19534 |
| Author(s) : Suzuki S , Ono N , Furusawa C , Ying BW , Yomo T |
| Ref : PLoS ONE , 6 :e19534 , 2011 |
| Abstract : Suzuki_2011_PLoS.One_6_e19534 |
| ESTHER : Suzuki_2011_PLoS.One_6_e19534 |
| PubMedSearch : Suzuki_2011_PLoS.One_6_e19534 |
| PubMedID: 21611185 |
| Gene_locus related to this paper: ecoli-rutD |
| Title : The Rut pathway for pyrimidine degradation: novel chemistry and toxicity problems. - Kim_2010_J.Bacteriol_192_4089 |
| Author(s) : Kim KS , Pelton JG , Inwood WB , Andersen U , Kustu S , Wemmer DE |
| Ref : Journal of Bacteriology , 192 :4089 , 2010 |
| Abstract : Kim_2010_J.Bacteriol_192_4089 |
| ESTHER : Kim_2010_J.Bacteriol_192_4089 |
| PubMedSearch : Kim_2010_J.Bacteriol_192_4089 |
| PubMedID: 20400551 |
| Gene_locus related to this paper: ecoli-rutD |
| Title : Host imprints on bacterial genomes--rapid, divergent evolution in individual patients - Zdziarski_2010_PLoS.Pathog_6_e1001078 |
| Author(s) : Zdziarski J , Brzuszkiewicz E , Wullt B , Liesegang H , Biran D , Voigt B , Gronberg-Hernandez J , Ragnarsdottir B , Hecker M , Ron EZ , Daniel R , Gottschalk G , Hacker J , Svanborg C , Dobrindt U |
| Ref : PLoS Pathog , 6 :e1001078 , 2010 |
| Abstract : Zdziarski_2010_PLoS.Pathog_6_e1001078 |
| ESTHER : Zdziarski_2010_PLoS.Pathog_6_e1001078 |
| PubMedSearch : Zdziarski_2010_PLoS.Pathog_6_e1001078 |
| PubMedID: 20865122 |
| Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-yafa , ecoli-ybff , ecoli-ycfp , ecoli-YFBB , ecoli-yqia , ecoli-YfhR |
| Title : Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes - Nash_2010_BMC.Genomics_11_667 |
| Author(s) : Nash JH , Villegas A , Kropinski AM , Aguilar-Valenzuela R , Konczy P , Mascarenhas M , Ziebell K , Torres AG , Karmali MA , Coombes BK |
| Ref : BMC Genomics , 11 :667 , 2010 |
| Abstract : Nash_2010_BMC.Genomics_11_667 |
| ESTHER : Nash_2010_BMC.Genomics_11_667 |
| PubMedSearch : Nash_2010_BMC.Genomics_11_667 |
| PubMedID: 21108814 |
| Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-entf , ecoli-IROD , ecoli-rdmC , ecoli-yafa , ecoli-ybff , ecoli-ycfp , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yqia , ecos5-d2nhh3 |
| Title : A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407 - Crossman_2010_J.Bacteriol_192_5822 |
| Author(s) : Crossman LC , Chaudhuri RR , Beatson SA , Wells TJ , Desvaux M , Cunningham AF , Petty NK , Mahon V , Brinkley C , Hobman JL , Savarino SJ , Turner SM , Pallen MJ , Penn CW , Parkhill J , Turner AK , Johnson TJ , Thomson NR , Smith SG , Henderson IR |
| Ref : Journal of Bacteriology , 192 :5822 , 2010 |
| Abstract : Crossman_2010_J.Bacteriol_192_5822 |
| ESTHER : Crossman_2010_J.Bacteriol_192_5822 |
| PubMedSearch : Crossman_2010_J.Bacteriol_192_5822 |
| PubMedID: 20802035 |
| Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yeiG , ecoli-YFBB , ecoli-yiel , ecoli-yqia |
| Title : Derivation of Escherichia coli O157:H7 from its O55:H7 precursor - Zhou_2010_PLoS.One_5_e8700 |
| Author(s) : Zhou Z , Li X , Liu B , Beutin L , Xu J , Ren Y , Feng L , Lan R , Reeves PR , Wang L |
| Ref : PLoS ONE , 5 :e8700 , 2010 |
| Abstract : Zhou_2010_PLoS.One_5_e8700 |
| ESTHER : Zhou_2010_PLoS.One_5_e8700 |
| PubMedSearch : Zhou_2010_PLoS.One_5_e8700 |
| PubMedID: 20090843 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR |
| Title : Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2 - Toh_2010_J.Bacteriol_192_1165 |
| Author(s) : Toh H , Oshima K , Toyoda A , Ogura Y , Ooka T , Sasamoto H , Park SH , Iyoda S , Kurokawa K , Morita H , Itoh K , Taylor TD , Hayashi T , Hattori M |
| Ref : Journal of Bacteriology , 192 :1165 , 2010 |
| Abstract : Toh_2010_J.Bacteriol_192_1165 |
| ESTHER : Toh_2010_J.Bacteriol_192_1165 |
| PubMedSearch : Toh_2010_J.Bacteriol_192_1165 |
| PubMedID: 20008064 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR , ecos5-d2nhh3 , yerpe-YBTT , ecolx-f4suw9 |
| Title : Genome sequences of Escherichia coli B strains REL606 and BL21(DE3) - Jeong_2009_J.Mol.Biol_394_644 |
| Author(s) : Jeong H , Barbe V , Lee CH , Vallenet D , Yu DS , Choi SH , Couloux A , Lee SW , Yoon SH , Cattolico L , Hur CG , Park HS , Segurens B , Kim SC , Oh TK , Lenski RE , Studier FW , Daegelen P , Kim JF |
| Ref : Journal of Molecular Biology , 394 :644 , 2009 |
| Abstract : Jeong_2009_J.Mol.Biol_394_644 |
| ESTHER : Jeong_2009_J.Mol.Biol_394_644 |
| PubMedSearch : Jeong_2009_J.Mol.Biol_394_644 |
| PubMedID: 19786035 |
| Gene_locus related to this paper: eco57-b3a913 , ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR |
| Title : A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis - Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713 |
| Author(s) : Leopold SR , Magrini V , Holt NJ , Shaikh N , Mardis ER , Cagno J , Ogura Y , Iguchi A , Hayashi T , Mellmann A , Karch H , Besser TE , Sawyer SA , Whittam TS , Tarr PI |
| Ref : Proc Natl Acad Sci U S A , 106 :8713 , 2009 |
| Abstract : Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713 |
| ESTHER : Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713 |
| PubMedSearch : Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713 |
| PubMedID: 19439656 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , neucr-q7sha3 |
| Title : Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348\/69 - Iguchi_2009_J.Bacteriol_191_347 |
| Author(s) : Iguchi A , Thomson NR , Ogura Y , Saunders D , Ooka T , Henderson IR , Harris D , Asadulghani M , Kurokawa K , Dean P , Kenny B , Quail MA , Thurston S , Dougan G , Hayashi T , Parkhill J , Frankel G |
| Ref : Journal of Bacteriology , 191 :347 , 2009 |
| Abstract : Iguchi_2009_J.Bacteriol_191_347 |
| ESTHER : Iguchi_2009_J.Bacteriol_191_347 |
| PubMedSearch : Iguchi_2009_J.Bacteriol_191_347 |
| PubMedID: 18952797 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR |
| Title : Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12 - Ferenci_2009_J.Bacteriol_191_4025 |
| Author(s) : Ferenci T , Zhou Z , Betteridge T , Ren Y , Liu Y , Feng L , Reeves PR , Wang L |
| Ref : Journal of Bacteriology , 191 :4025 , 2009 |
| Abstract : Ferenci_2009_J.Bacteriol_191_4025 |
| ESTHER : Ferenci_2009_J.Bacteriol_191_4025 |
| PubMedSearch : Ferenci_2009_J.Bacteriol_191_4025 |
| PubMedID: 19376874 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR |
| Title : Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5 - Fricke_2008_J.Bacteriol_190_6779 |
| Author(s) : Fricke WF , Wright MS , Lindell AH , Harkins DM , Baker-Austin C , Ravel J , Stepanauskas R |
| Ref : Journal of Bacteriology , 190 :6779 , 2008 |
| Abstract : Fricke_2008_J.Bacteriol_190_6779 |
| ESTHER : Fricke_2008_J.Bacteriol_190_6779 |
| PubMedSearch : Fricke_2008_J.Bacteriol_190_6779 |
| PubMedID: 18708504 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-estX , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , ecosm-b1lhu2 |
| Title : The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates - Rasko_2008_J.Bacteriol_190_6881 |
| Author(s) : Rasko DA , Rosovitz MJ , Myers GS , Mongodin EF , Fricke WF , Gajer P , Crabtree J , Sebaihia M , Thomson NR , Chaudhuri R , Henderson IR , Sperandio V , Ravel J |
| Ref : Journal of Bacteriology , 190 :6881 , 2008 |
| Abstract : Rasko_2008_J.Bacteriol_190_6881 |
| ESTHER : Rasko_2008_J.Bacteriol_190_6881 |
| PubMedSearch : Rasko_2008_J.Bacteriol_190_6881 |
| PubMedID: 18676672 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-Z2445 , ecoli-YfhR |
| Title : The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse - Durfee_2008_J.Bacteriol_190_2597 |
| Author(s) : Durfee T , Nelson R , Baldwin S , Plunkett G, 3rd , Burland V , Mau B , Petrosino JF , Qin X , Muzny DM , Ayele M , Gibbs RA , Csorgo B , Posfai G , Weinstock GM , Blattner FR |
| Ref : Journal of Bacteriology , 190 :2597 , 2008 |
| Abstract : Durfee_2008_J.Bacteriol_190_2597 |
| ESTHER : Durfee_2008_J.Bacteriol_190_2597 |
| PubMedSearch : Durfee_2008_J.Bacteriol_190_2597 |
| PubMedID: 18245285 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR |
| Title : Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult - Oshima_2008_DNA.Res_15_375 |
| Author(s) : Oshima K , Toh H , Ogura Y , Sasamoto H , Morita H , Park SH , Ooka T , Iyoda S , Taylor TD , Hayashi T , Itoh K , Hattori M |
| Ref : DNA Research , 15 :375 , 2008 |
| Abstract : Oshima_2008_DNA.Res_15_375 |
| ESTHER : Oshima_2008_DNA.Res_15_375 |
| PubMedSearch : Oshima_2008_DNA.Res_15_375 |
| PubMedID: 18931093 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR |
| Title : The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes - Johnson_2007_J.Bacteriol_189_3228 |
| Author(s) : Johnson TJ , Kariyawasam S , Wannemuehler Y , Mangiamele P , Johnson SJ , Doetkott C , Skyberg JA , Lynne AM , Johnson JR , Nolan LK |
| Ref : Journal of Bacteriology , 189 :3228 , 2007 |
| Abstract : Johnson_2007_J.Bacteriol_189_3228 |
| ESTHER : Johnson_2007_J.Bacteriol_189_3228 |
| PubMedSearch : Johnson_2007_J.Bacteriol_189_3228 |
| PubMedID: 17293413 |
| Gene_locus related to this paper: ecok1-a1acc0 , ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z1930 , ecoli-YfhR , ecout-q1r7l6 , yerpe-YBTT |
| Title : A previously undescribed pathway for pyrimidine catabolism - Loh_2006_Proc.Natl.Acad.Sci.U.S.A_103_5114 |
| Author(s) : Loh KD , Gyaneshwar P , Markenscoff Papadimitriou E , Fong R , Kim KS , Parales R , Zhou Z , Inwood W , Kustu S |
| Ref : Proc Natl Acad Sci U S A , 103 :5114 , 2006 |
| Abstract : Loh_2006_Proc.Natl.Acad.Sci.U.S.A_103_5114 |
| ESTHER : Loh_2006_Proc.Natl.Acad.Sci.U.S.A_103_5114 |
| PubMedSearch : Loh_2006_Proc.Natl.Acad.Sci.U.S.A_103_5114 |
| PubMedID: 16540542 |
| Gene_locus related to this paper: ecoli-rutD |
| Title : Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536 - Hochhut_2006_Mol.Microbiol_61_584 |
| Author(s) : Hochhut B , Wilde C , Balling G , Middendorf B , Dobrindt U , Brzuszkiewicz E , Gottschalk G , Carniel E , Hacker J |
| Ref : Molecular Microbiology , 61 :584 , 2006 |
| Abstract : Hochhut_2006_Mol.Microbiol_61_584 |
| ESTHER : Hochhut_2006_Mol.Microbiol_61_584 |
| PubMedSearch : Hochhut_2006_Mol.Microbiol_61_584 |
| PubMedID: 16879640 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C2451 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-IROD , ecoli-IROE , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , ecolx-q707d7 , yerpe-YBTT |
| Title : Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12 - Hayashi_2001_DNA.Res_8_11 |
| Author(s) : Hayashi T , Makino K , Ohnishi M , Kurokawa K , Ishii K , Yokoyama K , Han CG , Ohtsubo E , Nakayama K , Murata T , Tanaka M , Tobe T , Iida T , Takami H , Honda T , Sasakawa C , Ogasawara N , Yasunaga T , Kuhara S , Shiba T , Hattori M , Shinagawa H |
| Ref : DNA Research , 8 :11 , 2001 |
| Abstract : Hayashi_2001_DNA.Res_8_11 |
| ESTHER : Hayashi_2001_DNA.Res_8_11 |
| PubMedSearch : Hayashi_2001_DNA.Res_8_11 |
| PubMedID: 11258796 |
| Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-entf , ecoli-fes , ecoli-MCMK , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-Z1341 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR |
| Title : A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map - Oshima_1996_DNA.Res_3_137 |
| Author(s) : Oshima T , Aiba H , Baba T , Fujita K , Hayashi K , Honjo A , Ikemoto K , Inada T , Itoh T , Kajihara M , Kanai K , Kashimoto K , Kimura S , Kitagawa M , Makino K , Masuda S , Miki T , Mizobuchi K , Mori H , Motomura K , Nakamura Y , Nashimoto H , Nishio Y , Saito N , Horiuchi T , et al. |
| Ref : DNA Research , 3 :137 , 1996 |
| Abstract : Oshima_1996_DNA.Res_3_137 |
| ESTHER : Oshima_1996_DNA.Res_3_137 |
| PubMedSearch : Oshima_1996_DNA.Res_3_137 |
| PubMedID: 8905232 |
| Gene_locus related to this paper: ecoli-rutD , ecoli-fes , ecoli-ybff , ecoli-ycfp |