Gene_Locus Report

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Gene_locus Report for: fusox-w9hvf0

Fusarium oxysporum; Fusarium sp.. Arb2_domain

Comment
Other strains: Fusarium oxysporum (Fusarium vascular wilt) (FOSC 3-a; Fo47; Fo5176; f. sp. (cubense (strain race 4; tropical race 4 54006; race 1)) (Panama disease fungus); radicis-cucumerinum; . vasinfectum 25433; cepae; conglutinans race 2 54008; raphani 54005;. melonis 26406; lycopersici (strain 4287 / CBS 123668 / FGSC 9935 / NRRL 34936) (Fusarium vascular wilt of tomato); pisi HDV247)); Fusarium sp. only c-term Arb2 n-term histone deacetylase


Relationship
Family|Arb2_domain
Block| X
Position in NCBI Life Tree|Fusarium oxysporum
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Fungi: N E > Dikarya: N E > Ascomycota: N E > saccharomyceta: N E > Pezizomycotina: N E > leotiomyceta: N E > sordariomyceta: N E > Sordariomycetes: N E > Hypocreomycetidae: N E > Hypocreales: N E > Nectriaceae: N E > Fusarium: N E > Fusarium oxysporum species complex: N E > Fusarium oxysporum: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 17 more: JH717846, KB726995, MABQ02000008
>3 UniProt links 13 more: W9HVF0, N1RDD8, A0A2H3GMC3
>3 UniProt links 23 more: W9HVF0, N1RDD8, A0A2H3GMC3
>3 Interpro links 23 more: W9HVF0, N1RDD8, A0A2H3GMC3
>3 Pfam links 23 more: W9HVF0, N1RDD8, A0A2H3GMC3
>3 PIRSF links 23 more: W9HVF0, N1RDD8, A0A2H3GMC3
>3 SUPERFAM links 23 more: W9HVF0, N1RDD8, A0A2H3GMC3
Sequence
Graphical view for this peptide sequence: fusox-w9hvf0
Colored MSA for Arb2_domain (raw)
RLHDVIRNAQRQVLQTKHNMIPLYIQREHLYKSYENQVLVTPGLHKEKKV
LIIIHDPPELLAQPDVIDRSVDPHNAWVVDGVTDYIDWAVDQKFGVMDVN
IPAYVTHDEESDSYVPGFKEKALTEQIQTLVCYLWDNYLQLYDADHIFVM
GVGNAYLGVKVLLVNRDCKSRISGVVNFANGTLRPVKSEFDSDLSSWYKE
NSRVYIAGDHACWADPDLTRKVNKRRFGTVVRSPMFGLNKMMAHHAKEAR
EWILERVEEVADADMTEDEKS
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

RLHDVIRNAQRQVLQTKHNMIPLYIQREHLYKSYENQVLVTPGLHKEKKV
LIIIHDPPELLAQPDVIDRSVDPHNAWVVDGVTDYIDWAVDQKFGVMDVN
IPAYVTHDEESDSYVPGFKEKALTEQIQTLVCYLWDNYLQLYDADHIFVM
GVGNAYLGVKVLLVNRDCKSRISGVVNFANGTLRPVKSEFDSDLSSWYKE
NSRVYIAGDHACWADPDLTRKVNKRRFGTVVRSPMFGLNKMMAHHAKEAR
EWILERVEEVADADMTEDEKS


References
4 more
    Title: Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae
    Armitage AD, Taylor A, Sobczyk MK, Baxter L, Greenfield BPJ, Bates HJ, Wilson F, Jackson AC, Ott S and Clarkson JP <1 more author(s)>
    Ref: Sci Rep, 8:13530, 2018 : PubMed

            

    Title: A mobile pathogenicity chromosome in Fusarium oxysporum for infection of multiple cucurbit species
    van Dam P, Fokkens L, Ayukawa Y, van der Gragt M, Ter Horst A, Brankovics B, Houterman PM, Arie T, Rep M
    Ref: Sci Rep, 7:9042, 2017 : PubMed

            

    Title: Effector profiles distinguish formae speciales of Fusarium oxysporum
    van Dam P, Fokkens L, Schmidt SM, Linmans JH, Kistler HC, Ma LJ, Rep M
    Ref: Environ Microbiol, 18:4087, 2016 : PubMed

            


Other Papers


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Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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