Gene_locus Report for: hahch-q2skv5 Hahella chejuensis (strain KCTC 2396)AlphaBeta_hydrolase superfamily)
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Oceanospirillales: N E > Hahellaceae: N E > Hahella: N E > Hahella chejuensis: N E 6_AlphaBeta_hydrolase :
hahch-q2s809 Hahella chejuensis (strain KCTC 2396) ,
hahch-q2sbd6 Hahella chejuensis (strain KCTC 2396) AlphaBeta_hydrolase superfamily ,
hahch-q2sc65 Hahella chejuensis (strain KCTC 2396) hydrolase of the alpha/beta superfamily ,
hahch-q2scc5 Hahella chejuensis (strain KCTC 2396) AlphaBeta_hydrolase superfamily ,
hahch-q2sci6 Hahella chejuensis (strain KCTC 2396) AlphaBeta_hydrolase superfamily) ,
hahch-q2sdy2 Hahella chejuensis (strain KCTC 2396) AlphaBeta_hydrolase superfamily) ,
hahch-q2sgt0 Hahella chejuensis (strain KCTC 2396) AlphaBeta_hydrolase superfamily ,
hahch-q2shj8 Hahella chejuensis (strain KCTC 2396) hydrolase of the alpha/beta superfamily ,
hahch-q2sje8 Hahella chejuensis (strain KCTC 2396)AlphaBeta_hydrolase superfamily) ,
hahch-q2skl5 Hahella chejuensis (strain KCTC 2396) AlphaBeta_hydrolase superfamily) ,
hahch-q2sn09 Hahella chejuensis (strain KCTC 2396) Putative uncharacterized protein ,
hahch-q2snn5 Hahella chejuensis (strain KCTC 2396) Predicted Hydrolase or acyltransferase (Alpha/beta hydrolase superfamily) ,
hahch-q2snq6 Hahella chejuensis (strain KCTC 2396) Predicted acetyltransferase and Hydrolase with the alpha/beta hydrolase fold ,
hahch-q2sqx6 Hahella chejuensis (strain KCTC 2396) AlphaBeta_hydrolase superfamily .
A85-EsteraseD-FGH :
hahch-q2sm17 Hahella chejuensis (strain KCTC 2396) predicted esterase .
A85-IroE-IroD-Fes-Yiel :
hahch-q2sfm2 Hahella chejuensis (strain KCTC 2396) enterochelin esterase and related enzyme .
ABHD6-Lip :
hahch-q2sq02 Hahella chejuensis (strain KCTC 2396) Predicted Hydrolase or acyltransferase (Alpha/beta hydrolase superfamily) .
ABHD11-Acetyl_transferase :
hahch-q2s7u4 Hahella chejuensis (strain KCTC 2396) AlphaBeta_hydrolase superfamily .
abh_upf0017 :
hahch-q2sqg8 Hahella chejuensis (strain KCTC 2396) predicted hydrolase of the alpha/beta-hydrolase fold .
abh_upf00227 :
hahch-q2s9n3 Hahella chejuensis (strain KCTC 2396) predicted esterase .
Aclacinomycin-methylesterase_RdmC :
hahch-q2s803 Hahella chejuensis (strain KCTC 2396) AlphaBeta_hydrolase superfamily .
Bacterial_lip_FamI.8 :
hahch-q2sgz8 Hahella chejuensis (strain KCTC 2396) putative esterase/lipase .
BD-FAE :
hahch-q2slq4 Hahella chejuensis (strain KCTC 2396) esterase/lipase .
Carbon-carbon_bond_hydrolase :
hahch-q2sfx3 Hahella chejuensis (strain KCTC 2396) AlphaBeta_hydrolase superfamily) .
Carb_B_Bacteria :
hahch-q2scw7 Hahella chejuensis (strain KCTC 2396) carboxylesterase type b .
Dienelactone_hydrolase :
hahch-q2sic0 Hahella chejuensis (strain KCTC 2396) dienelactone hydrolase and related enzyme ,
hahch-q2sqn4 Hahella chejuensis (strain KCTC 2396) dienelactone hydrolase and related enzyme .
Duf_3530 :
hahch-q2s9b5 Hahella chejuensis (strain KCTC 2396) Putative uncharacterized protein .
Epoxide_hydrolase :
hahch-q2sj56 Hahella chejuensis (strain KCTC 2396)Epoxide_hydrolase .
Haloalkane_dehalogenase-HLD1 :
hahch-q2sav4 Hahella chejuensis (strain KCTC 2396) Haloalkane_dehalogenase HLDIII .
Haloperoxidase :
hahch-q2shq5 Hahella chejuensis (strain KCTC 2396) AlphaBeta_hydrolase superfamily .
HNLyase_Bact :
hahch-q2shp0 Hahella chejuensis (strain KCTC 2396) lysophospholipase .
Homoserine_transacetylase :
hahch-q2s8m0 Hahella chejuensis (strain KCTC 2396) homoserine o-acetyltransferase (EC 2.3.1.31) .
Hormone-sensitive_lipase_like :
hahch-q2spk1 Hahella chejuensis (strain KCTC 2396) esterase/lipase ,
hahch-q2spm8 Hahella chejuensis (strain KCTC 2396) esterase/lipase .
Hydrolase_RBBP9_YdeN :
hahch-q2shv4 Hahella chejuensis (strain KCTC 2396) predicted esterase of the alpha/beta hydrolase fold .
Lipase_3 :
hahch-q2s829 Hahella chejuensis (strain KCTC 2396) predicted lipase ,
hahch-q2sct6 Hahella chejuensis (strain KCTC 2396) probable class 3 lipase .
LipSM54-like_FamXVI :
hahch-q2seh8 Hahella chejuensis (strain KCTC 2396) predicted acyl esterases .
LYsophospholipase_carboxylesterase :
hahch-q2sll2 Hahella chejuensis (strain KCTC 2396) predicted esterase .
Monoglyceridelipase_lysophospholip :
hahch-q2sls7 Hahella chejuensis (strain KCTC 2396) Lysophospholipase .
NLS3-Tex30 :
hahch-q2sjs2 Hahella chejuensis (strain KCTC 2396) Predicted hydrolase of the alpha/beta-hydrolase fold .
Pectinacetylesterase-Notum :
hahch-q2seq6 Hahella chejuensis (strain KCTC 2396) Putative uncharacterized protein .
Peptidase_S37 :
hahch-q2sae5 Hahella chejuensis; Hahella sp. probable secreted peptidase .
PGAP1 :
hahch-q2s796 Hahella chejuensis (strain KCTC 2396) hydrolase fold .
PhaC_cen_dom :
hahch-q2spi5 Hahella chejuensis (strain KCTC 2396) poly(3-hydroxyalkanoate) synthetase .
PHA_synth_I :
hahch-q2sje1 Hahella chejuensis (strain KCTC 2396) poly(3-hydroxyalkanoate) synthetase .
PHA_synth_III_C :
hahch-q2sl80 Hahella chejuensis (strain KCTC 2396) poly(3-hydroxyalkanoate) synthetase .
Proline_iminopeptidase :
hahch-q2sn54 Hahella chejuensis (strain KCTC 2396) proline iminopeptidase (pip) (prolyl aminopeptidase) (pap) .
Thioesterase :
hahch-q2s6v8 Hahella chejuensis (strain KCTC 2396) predicted thioesterase involved in non-ribosomal peptide biosynthesis ,
hahch-q2sfm4 Hahella chejuensis (strain KCTC 2396) non-ribosomal peptide synthetase modules and related protein ,
hahch-q2sgj4 Hahella chejuensis (strain KCTC 2396) polyketide synthase modules and related protein ,
hahch-q2sgn6 Hahella chejuensis (strain KCTC 2396) predicted thioesterase involved in non-ribosomal peptide biosynthesis ,
hahch-q2shz6 Hahella chejuensis (strain KCTC 2396) non-ribosomal peptide synthetase modules and related protein ,
hahch-q2sil6 Hahella chejuensis (strain KCTC 2396) non-ribosomal peptide synthetase modules and related protein ,
hahch-q2skf9 Hahella chejuensis (strain KCTC 2396) non-ribosomal peptide synthetase modules and related protein ,
hahch-q2skg3 Hahella chejuensis (strain KCTC 2396) predicted thioesterase involved in non-ribosomal peptide biosynthesis .
UCP031982 :
hahch-q2sfm9 Hahella chejuensis (strain KCTC 2396) predicted dienelactone hydrolase ,
hahch-q2shv0 Hahella chejuensis (strain KCTC 2396) Predicted dienelactone hydrolase .
UCP037442 :
hahch-q2snw9 Hahella chejuensis (strain KCTC 2396) predicted alpha/beta hydrolase Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: hahch-q2skv5 Colored MSA for Aclacinomycin-methylesterase_RdmC (raw)
MTVEHVAVGDIQLAYETFGSRKDPCILLIMGLGAQMLVWPDALCERLAAN
GYFVVRFDNRDIGLSSKSDGEGHARPVTNFLRKQFGLKVKSAYTLSDLAN
DAIGLLNALRIANAHFFGASMGGMIAQIAAAKYPERALSLTSIMSAPGFS
RLPALNPANLLALIKPMRPKSRAEIIESKINQIRRIGSRSYPSSRSELLQ
RVGKVLDRSPVDHEGLQRQASAILAEGSLVELQKRIITPTLIIHGDEDSL
IPLSEGVACARNIRGAQLEVIAGMGHDFPSPLIARVAKVVLQHVGEATTR
TGNACEQA
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M T V E H V A V G D I Q L A Y E T F G S R K D P C I L L I M G L G A Q M L V W P D A L C E R L A A N G Y F V V R F D N R D I G L S S K S D G E G H A R P V T N F L R K Q F G L K V K S A Y T L S D L A N D A I G L L N A L R I A N A H F F G A S M G G M I A Q I A A A K Y P E R A L S L T S I M S A P G F S R L P A L N P A N L L A L I K P M R P K S R A E I I E S K I N Q I R R I G S R S Y P S S R S E L L Q R V G K V L D R S P V D H E G L Q R Q A S A I L A E G S L V E L Q K R I I T P T L I I H G D E D S L I P L S E G V A C A R N I R G A Q L E V I A G M G H D F P S P L I A R V A K V V L Q H V G E A T T R T G N A C E Q A
Reference
Title: Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agentJeong H , Yim JH , Lee C , Choi SH , Park YK , Yoon SH , Hur CG , Kang HY , Kim D and Kim JF <6 more author(s)> Jeong H , Yim JH , Lee C , Choi SH , Park YK , Yoon SH , Hur CG , Kang HY , Kim D , Lee HH , Park KH , Park SH , Park HS , Lee HK , Oh TK , Kim JF (- 6) Ref: Nucleic Acids Research, 33 :7066, 2005 : PubMed Abstract ESTHER: Jeong_2005_Nucleic.Acids.Res_33_7066 PubMedSearch: Jeong 2005 Nucleic.Acids.Res 33 7066 PubMedID: 16352867 Gene_locus related to this paper: hahch-q2s6v8 ,
hahch-q2s7u4 ,
hahch-q2s8m0 ,
hahch-q2s9b5 ,
hahch-q2s9n3 ,
hahch-q2s796 ,
hahch-q2s803 ,
hahch-q2s809 ,
hahch-q2s829 ,
hahch-q2sae5 ,
hahch-q2sav4 ,
hahch-q2sbd6 ,
hahch-q2sc65 ,
hahch-q2scc5 ,
hahch-q2sci6 ,
hahch-q2sct6 ,
hahch-q2scw7 ,
hahch-q2sdy2 ,
hahch-q2seh8 ,
hahch-q2seq6 ,
hahch-q2sfm2 ,
hahch-q2sfm4 ,
hahch-q2sfm9 ,
hahch-q2sfx3 ,
hahch-q2sgj4 ,
hahch-q2sgn6 ,
hahch-q2sgt0 ,
hahch-q2sgz8 ,
hahch-q2shj8 ,
hahch-q2shp0 ,
hahch-q2shq5 ,
hahch-q2shv0 ,
hahch-q2shv4 ,
hahch-q2shz6 ,
hahch-q2sic0 ,
hahch-q2sil6 ,
hahch-q2sj56 ,
hahch-q2sje1 ,
hahch-q2sje8 ,
hahch-q2skf9 ,
hahch-q2skg3 ,
hahch-q2skl5 ,
hahch-q2skv5 ,
hahch-q2sl80 ,
hahch-q2sll2 ,
hahch-q2slq4 ,
hahch-q2sls7 ,
hahch-q2sm17 ,
hahch-q2sn09 ,
hahch-q2sn54 ,
hahch-q2snn5 ,
hahch-q2snq6 ,
hahch-q2snw9 ,
hahch-q2spi5 ,
hahch-q2spk1 ,
hahch-q2spm8 ,
hahch-q2sq02 ,
hahch-q2sqg8 ,
hahch-q2sqn4 ,
hahch-q2sqx6 ,
hahch-q2sjs2 Abstract
Harmful algal blooms, caused by rapid growth and accumulation of certain microalgae in the ocean, pose considerable impacts on marine environments, aquatic industries and even public health. Here, we present the 7.2-megabase genome of the marine bacterium Hahella chejuensis including genes responsible for the biosynthesis of a pigment which has the lytic activity against a red-tide dinoflagellate. H.chejuensis is the first sequenced species in the Oceanospiralles clade, and sequence analysis revealed its distant relationship to the Pseudomonas group. The genome was well equipped with genes for basic metabolic capabilities and contained a large number of genes involved in regulation or transport as well as with characteristics as a marine heterotroph. Sequence analysis also revealed a multitude of genes of functional equivalence or of possible foreign origin. Functions encoded in the genomic islands include biosynthesis of exopolysacchrides, toxins, polyketides or non-ribosomal peptides, iron utilization, motility, type III protein secretion and pigmentation. Molecular structure of the algicidal pigment, which was determined through LC-ESI-MS/MS and NMR analyses, indicated that it is prodigiosin. In conclusion, our work provides new insights into mitigating algal blooms in addition to genetic make-up, physiology, biotic interactions and biological roles in the community of a marine bacterium.
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