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Gene_locus Report for: halaf-s2kmg9

Halomonas anticariensis FP35 = DSM 16096. Halomonas anticariensis FP35 = DSM 16096 strain FP35 Scaffold3_13, whole genome shotgun sequence

Relationship
Family|NFM-deformylase
Block| X
Position in NCBI Life Tree|Halomonas anticariensis FP35 = DSM 16096
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Oceanospirillales: N E > Halomonadaceae: N E > Halomonas: N E > Halomonas anticariensis: N E > Halomonas anticariensis FP35 = DSM 16096: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : ASTJ01000030
1 UniProt : S2KMG9
1 UniProt : S2KMG9
1 Interpro : S2KMG9
1 Pfam : S2KMG9
1 PIRSF : S2KMG9
1 SUPERFAM : S2KMG9
Sequence
Peptide
Graphical view for this peptide sequence: halaf-s2kmg9
Colored MSA for NFM-deformylase (raw) 
MSSTFLYGANVHANGIRQHYLRYGGDSTSTGQPLVLIPGITSPAVTWGFV
AERLGQHFDTYVLDVRGRGLSSSGPELGYDTNTCADDVIAFIRALQLENV
VLAGHSMGARFTIRAMTRGAENVDKLVLIDPPVSGPGRREYPSKLPWYVD
SIRDCLQGADIETMRQYCPTWSEEHLRLRAEWLHTCFEPAIVQAFEEFHS
VDIHQDLPGIDVPTLLICAGKGGVIQDADKAEIRELLPSTRIATAENAGH
MIPWDDYEGFFDAFGDFLGPEL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA
MSSTFLYGANVHANGIRQHYLRYGGDSTSTGQPLVLIPGITSPAVTWGFV
AERLGQHFDTYVLDVRGRGLSSSGPELGYDTNTCADDVIAFIRALQLENV
VLAGHSMGARFTIRAMTRGAENVDKLVLIDPPVSGPGRREYPSKLPWYVD
SIRDCLQGADIETMRQYCPTWSEEHLRLRAEWLHTCFEPAIVQAFEEFHS
VDIHQDLPGIDVPTLLICAGKGGVIQDADKAEIRELLPSTRIATAENAGH
MIPWDDYEGFFDAFGDFLGPEL

Reference
    Title: Draft Genome Sequence of the Moderately Halophilic Gammaproteobacterium Halomonas anticariensis FP35T
    Tahrioui A, Quesada E, Llamas I
    Ref: Genome Announc, 1:e00497, 2013 : PubMed

            


Other Papers

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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