Gene_Locus Report

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Gene_locus Report for: lisin-LIN2722

Listeria innocua hypothetical protein lin2722

Comment
Other strains: Listeria innocua (strains: FSL S4-378; FSL J1-023; serovar 6a (strain CLIP 11262))


Relationship
Family|Duf_915
Block| X
Position in NCBI Life Tree|Listeria innocua
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Firmicutes: N E > Bacilli: N E > Bacillales: N E > Listeriaceae: N E > Listeria: N E > Listeria innocua: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
1 structure:
3DS8: The crystal structure of the gene lin2722 products from Listeria innocua
No kinetic





No Substrate
No inhibitor
1 Genbank : AL596173
1 UniProt : Q927R6
1 Structure : 3DS8
1 UniProt : Q927R6
1 Interpro : Q927R6
1 Prodom : Q927R6
1 Pfam : Q927R6
1 PIRSF : Q927R6
1 SUPERFAM : Q927R6
Sequence
Graphical view for this peptide sequence: lisin-LIN2722
Colored MSA for Duf_915 (raw)
MKKYFITIMILLFGTLILAACQNSDEADNYEPPKVDLKDQIPIILIHGSG
GNASSLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIK
FGFEQNQATPDDWSKWLKIAMEDLKSRYGFTQMDGVGHSNGGLALTYYAE
DYAGDKTVPTLRKLVAIGSPFNDLDPNDNGMDLSFKKLPNSTPQMDYFIK
NQTEVSPDLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPGSAKAYIED
IQVGEDAVHQTLHETPKSIEKTYWFLEKFKTDETVIQLDYK
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MKKYFITIMILLFGTLILAACQNSDEADNYEPPKVDLKDQIPIILIHGSG
GNASSLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIK
FGFEQNQATPDDWSKWLKIAMEDLKSRYGFTQMDGVGHSNGGLALTYYAE
DYAGDKTVPTLRKLVAIGSPFNDLDPNDNGMDLSFKKLPNSTPQMDYFIK
NQTEVSPDLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPGSAKAYIED
IQVGEDAVHQTLHETPKSIEKTYWFLEKFKTDETVIQLDYK


References
    Title: Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss
    den Bakker HC, Cummings CA, Ferreira V, Vatta P, Orsi RH, Degoricija L, Barker M, Petrauskene O, Furtado MR, Wiedmann M
    Ref: BMC Genomics, 11:688, 2010 : PubMed

            

    Title: Comparative genomics of Listeria species
    Glaser P, Frangeul L, Buchrieser C, Rusniok C, Amend A, Baquero F, Berche P, Bloecker H, Brandt P and Cossart P <45 more author(s)>
    Ref: Science, 294:849, 2001 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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