Gene_Locus Report

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Gene_locus Report for: lismo-LMO0950

Listeria monocytogenes, hypothetical protein lmo0950

Comment
Other strains: Listeria monocytogenes (strains F6900; FSL N1-017; J2818; HPB2262; FSL J1-194; FSL N3-165; FSL R2-503; 1/2a (F6854; 08-5923; 08-5578; ATCC BAA-679 / EGD-e); 4b (H7858; F2365; CLIP80459)) Q721L6 (serotype 4b / strain F2365) Nelson et al


Relationship
Family|Duf_915
Block| X
Position in NCBI Life Tree|Listeria monocytogenes
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Firmicutes: N E > Bacilli: N E > Bacillales: N E > Listeriaceae: N E > Listeria: N E > Listeria monocytogenes: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 1 more: AE017325, AL591977, AADR01000055
1 UniProt : Q8Y8F4
1 UniProt : Q8Y8F4
1 Interpro : Q8Y8F4
1 Pfam : Q8Y8F4
1 PIRSF : Q8Y8F4
1 SUPERFAM : Q8Y8F4
Sequence
Graphical view for this peptide sequence: lismo-LMO0950
Colored MSA for Duf_915 (raw)
MKKVIILIIALAVIITGFWIIFLQFEPTKKEAKEPTVTANKTTTKEQNSV
SEIAIPTLFVHGYSGTANSFGGMINRLAEDGDVTKSLVMNVAADGTVSSK
GDYDKFSHNPTIQVIFEDNKSSAANQTQWIQNVMKELKNNYHIEKVYAVG
HSMGGVSLTSYIEKVGNDKTYPVLEKLVLIGAPLNGLVIGDDGVTAYDLT
DSGPKKSSDRYSEFMKNKQKIPTNLHVLNIAGDTLNGTKSDGSVSVASAL
SGKFIFEGQAASYEEKTFTGKNAAHSKLHENTNVDAEVADFLWGIEKVD
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MKKVIILIIALAVIITGFWIIFLQFEPTKKEAKEPTVTANKTTTKEQNSV
SEIAIPTLFVHGYSGTANSFGGMINRLAEDGDVTKSLVMNVAADGTVSSK
GDYDKFSHNPTIQVIFEDNKSSAANQTQWIQNVMKELKNNYHIEKVYAVG
HSMGGVSLTSYIEKVGNDKTYPVLEKLVLIGAPLNGLVIGDDGVTAYDLT
DSGPKKSSDRYSEFMKNKQKIPTNLHVLNIAGDTLNGTKSDGSVSVASAL
SGKFIFEGQAASYEEKTFTGKNAAHSKLHENTNVDAEVADFLWGIEKVD


References
1 more
    Title: High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak
    Gilmour MW, Graham M, Van Domselaar G, Tyler S, Kent H, Trout-Yakel KM, Larios O, Allen V, Lee B, Nadon C
    Ref: BMC Genomics, 11:120, 2010 : PubMed

            

    Title: Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species
    Nelson KE, Fouts DE, Mongodin EF, Ravel J, DeBoy RT, Kolonay JF, Rasko DA, Angiuoli SV, Gill SR and Fraser CM <23 more author(s)>
    Ref: Nucleic Acids Research, 32:2386, 2004 : PubMed

            

    Title: Comparative genomics of Listeria species
    Glaser P, Frangeul L, Buchrieser C, Rusniok C, Amend A, Baquero F, Berche P, Bloecker H, Brandt P and Cossart P <45 more author(s)>
    Ref: Science, 294:849, 2001 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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