Gene_locus Report for: maize-a0a3l6e780 Zea mays (Maize). Putative carboxylesterase 17
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > PACMAD clade: N E > Panicoideae: N E > Andropogonodae: N E > Andropogoneae: N E > Tripsacinae: N E > Zea: N E > Zea mays: N E 6_AlphaBeta_hydrolase :
maize-b6u1c6 Zea mays (Maize) seed-specific esterase regulator of tocopherol content ZmVTE7 ,
maize-b4fg35 Zea mays (Maize) Putative uncharacterized protein .
A85-EsteraseD-FGH :
maize-b6t2y5 Zea mays (Maize) Putative uncharacterized protein .
ABHD13-BEM46 :
maize-b4fd83 Zea mays (Maize). Alpha/beta-Hydrolases superfamily protein .
ABHD18 :
maize-b8a0v1 Zea mays (Maize) Putative uncharacterized protein .
abh_upf0017 :
maize-b6u4k5 Zea mays (Maize) Embryogenesis-associated protein EMB8 .
Acidic_Lipase :
maize-b6t9i6 Zea mays (Maize) Lipase .
BD-FAE :
maize-b4ffc7 Zea mays (Maize) Putative uncharacterized protein ,
maize-b6uah8 Zea mays (Maize) Carboxylesterase-like protein .
Bodyguard :
maize-a0a317y1z8 Zea mays (Maize) Putative lysophospholipase BODYGUARD 3 ,
maize-a0a3l6dbz7 Zea mays (Maize) Putative lysophospholipase BODYGUARD 3 ,
maize-a0a3l6efm3 Zea mays (Maize) Putative lysophospholipase BODYGUARD 3 .
Carboxypeptidase_S10 :
maize-b4fc42 Zea mays (Maize) Uncharacterized protein ,
maize-c0hfi7 Zea mays (Maize) Uncharacterized protein ,
maize-c0hhb1 Zea mays (Maize) Uncharacterized protein ,
maize-c0hhp4 Zea mays (Maize) Uncharacterized protein ,
maize-b4fg76 Zea mays (Maize) Serine carboxypeptidase-like 19 IA-myo-inositol synthase .
CGI-58_ABHD5_ABHD4 :
maize-b4faq7 Zea mays (Maize) Putative uncharacterized protein .
Chlorophyllase_Plant :
maize-b6u4j0 Zea mays (Maize) Chlorophyllase-2 ,
maize-c0pcy5 Zea mays (Maize) Putative uncharacterized protein ,
maize-a0a096swr3 Zea mays (Maize). Uncharacterized protein .
CMBL :
maize-b4fv80 Zea mays (Maize). Carboxymethylenebutenolidase .
Dienelactone_hydrolase :
maize-e134 Zea mays (Maize) endo-1,3;1,4-beta-d-glucanase precursor (EC 3.2.1.-.) .
DPP4N_Peptidase_S9 :
maize-c0hhs0 Zea mays (Maize) Putative uncharacterized protein .
Duf_726 :
maize-b4f9g7 Zea mays (Maize) Putative uncharacterized protein ,
maize-b4fgc3 Zea mays (Maize) Putative uncharacterized protein .
Duf_1350 :
maize-b6t978 Zea mays (Maize); Arundo donax (Giant reed) Putative uncharacterized protein ,
maize-c0hia5 Zea mays (Maize) Putative uncharacterized protein .
Duf_1749 :
maize-c0pa79 Zea mays (Maize) Uncharacterized protein .
Epoxide_hydrolase :
maize-b4ff27 Zea mays (Maize) Putative uncharacterized protein ,
maize-b4fp91 Zea mays (Maize) Epoxide hydrolase 2 ,
maize-b4fwq7 Zea mays (Maize) Putative uncharacterized protein ,
maize-b6suw2 Zea mays (Maize) Putative uncharacterized protein ,
maize-b6t857 Zea mays (Maize) Epoxide hydrolase 2 ,
maize-b6u9l8 Zea mays (Maize) Epoxide hydrolase 2 ,
maize-b6uii7 Zea mays (Maize) Epoxide hydrolase 2 ,
maize-c0pi43 Zea mays (Maize) Putative uncharacterized protein .
Hydroxynitrile_lyase :
maize-b6sjm2 Zea mays (Maize) Esterase PIR7B ,
maize-b6tpp0 Zea mays (Maize) Polyneuridine-aldehyde esterase ,
maize-b6u2i9 Zea mays (Maize) Esterase PIR7B ,
maize-b6u5b4 Zea mays (Maize) Esterase PIR7A ,
maize-b6u8r6 Zea mays (Maize) Esterase PIR7A ,
maize-b6u048 Zea mays (Maize) Esterase PIR7B ,
maize-c0p9m6 Zea mays (Maize) Putative uncharacterized protein ,
maize-c0pnm1 Zea mays (Maize) Putative uncharacterized protein Esterase PIR7B ,
maize-c0pnx9 Zea mays (Maize) Putative uncharacterized protein .
LIDHydrolase :
maize-b4fuv1 Zea mays (Maize) Putative uncharacterized protein .
LYsophospholipase_carboxylesterase :
maize-b6t1C9 .
Maspardin-ACP33-SPG21_like :
maize-b6trt5 Zea mays (Maize) Putative uncharacterized protein .
Monoglyceridelipase_lysophospholip :
maize-b4f7w5 Zea mays (Maize) Putative uncharacterized protein ,
maize-b4ffl7 Zea mays (Maize) Putative uncharacterized protein ,
maize-c0hdv1 Zea mays (Maize) Putative uncharacterized protein .
Ndr_family :
maize-b4feg9 Zea mays (Maize) Uncharacterized protein ,
maize-c0pfl3 Zea mays (Maize) Uncharacterized protein ,
maize-b4fpr7 Zea mays (Maize) Uncharacterized protein .
NLS3-Tex30 :
maize-b6u7e1 Zea mays (Maize) Esterase/lipase/thioesterase family protein .
Pectinacetylesterase-Notum :
maize-b4f9x6 Zea mays (Maize) Putative uncharacterized protein ,
maize-b4fvg6 Zea mays (Maize) Putative uncharacterized protein ,
maize-b6trm6 Zea mays (Maize) Carboxylic ester hydrolase ,
maize-b6u7q4 Zea mays (Maize) Carboxylic ester hydrolase ,
maize-b6u063 Zea mays (Maize) Carboxylic ester hydrolase ,
maize-b8a2j2 Zea mays (Maize) Putative uncharacterized protein ,
maize-c0pgf7 Zea mays (Maize) Putative uncharacterized protein ,
maize-c0pgw1 Zea mays (Maize) Putative uncharacterized protein ,
maize-k7vy73 Zea mays (Maize). Uncharacterized protein .
Pheophytinase :
maize-b4fz64 Zea mays (Maize) Putative uncharacterized protein ,
maize-b6ti01 Zea mays (Maize) Hydrolase, alpha/beta fold family protein .
Plant_carboxylesterase :
maize-k7v3i9 Zea mays (Maize). Putative carboxylesterase 17 ,
maize-b6u9v9 Zea mays (Maize). Putative carboxylesterase 17. Hsr203J .
Plant_lipase_EDS1-like :
maize-b4fpy6 Zea mays (Maize). Protein EDS1 .
PMH_Peptidase_S9 :
maize-b6uhc0 Zea mays (Maize) Putative uncharacterized protein .
PPase_methylesterase_euk :
maize-b6til5 Zea mays (Maize) Protein phosphatase methylesterase 1 .
Proline_iminopeptidase :
maize-b4f869 Zea mays (Maize). Proline iminopeptidase ,
maize-b4fqc9 Zea mays (Maize). Proline iminopeptidase .
Prolylcarboxypeptidase :
maize-b4f9i1 Zea mays (Maize) Lysosomal Pro-X carboxypeptidase ,
maize-b6thh6 Zea mays (Maize) Prolyl carboxypeptidase like protein ,
maize-b8a0f2 Zea mays (Maize) Uncharacterized protein .
RsbQ-like :
maize-b6trw7 Zea mays (Maize) D14 Sigma factor sigB regulation protein rsbQ ,
maize-b6tze5 Zea mays (Maize) D14L Sigma factor sigB regulation protein rsbQ ,
maize-c0pef2 Zea mays (Maize) Putative uncharacterized protein .
S9N_PREPL_Peptidase_S9 :
maize-b6sw49 Zea mays (Maize) Protease 2 ,
maize-b6u2a2 Zea mays (Maize) Protease 2 .
Triacylglycerol-lipase-OBL1-like :
maize-a0a1d6nse2 Zea mays (Maize). Triacylglycerol lipase-like 1 ,
maize-a0a3l6d913 Zea mays (Maize). Lipase .
UCP031088 :
maize-a0a1d6kqc9 Zea mays (Maize). Uncharacterized conserved protein UCP031088 alpha/beta hydrolase ,
maize-b6svg4 Zea mays (Maize). Uncharacterized conserved protein UCP031088 alpha/beta hydrolase Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: maize-a0a3l6e780 Colored MSA for Plant_carboxylesterase (raw)
MANATVPELQPQVQAAGGRKVVDEVSGWLRVLDDGSVDRTWTGPPEVLPM
MQPVAPYDVPRDGHTLHDLPGEPNFRIYLPEVDDDRKGGRLPVIVHFHGG
GFCFSHPSWLMYHQFYSRLACAVPAVVVSVELPLAPERRLPAHIDTAVAA
VRRLRCIALSEDGALGDKAAKLLREAADVSRVFLVGDSSGANVSHFTAAR
VGQDGAGVWAPLRVAGCVLIQPGFVRATRSRSELEVGESVFFTLDMLDKC
QAMALPVGATKEHPFSCPMGPQAPPLESVPLPPMMVAVGEKDLVRDTNLE
YCDALRAAGKEVEVLVSRGMSHAFYLNKFAVDMDPSTGERTKELIDAIVS
FIASH
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M A N A T V P E L Q P Q V Q A A G G R K V V D E V S G W L R V L D D G S V D R T W T G P P E V L P M M Q P V A P Y D V P R D G H T L H D L P G E P N F R I Y L P E V D D D R K G G R L P V I V H F H G G G F C F S H P S W L M Y H Q F Y S R L A C A V P A V V V S V E L P L A P E R R L P A H I D T A V A A V R R L R C I A L S E D G A L G D K A A K L L R E A A D V S R V F L V G D S S G A N V S H F T A A R V G Q D G A G V W A P L R V A G C V L I Q P G F V R A T R S R S E L E V G E S V F F T L D M L D K C Q A M A L P V G A T K E H P F S C P M G P Q A P P L E S V P L P P M M V A V G E K D L V R D T N L E Y C D A L R A A G K E V E V L V S R G M S H A F Y L N K F A V D M D P S T G E R T K E L I D A I V S F I A S H
References
Title: Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomesSun S , Zhou Y , Chen J , Shi J , Zhao H , Song W , Zhang M , Cui Y , Dong X and Lai J <16 more author(s)> Sun S , Zhou Y , Chen J , Shi J , Zhao H , Song W , Zhang M , Cui Y , Dong X , Liu H , Ma X , Jiao Y , Wang B , Wei X , Stein JC , Glaubitz JC , Lu F , Yu G , Liang C , Fengler K , Li B , Rafalski A , Schnable PS , Ware DH , Buckler ES , Lai J (- 16) Ref: Nat Genet, 50 :1289, 2018 : PubMed Abstract ESTHER: Sun_2018_Nat.Genet_50_1289 PubMedSearch: Sun 2018 Nat.Genet 50 1289 PubMedID: 30061735 Gene_locus related to this paper: maize-a0a1d6kqc9 ,
maize-k7v3i9 ,
maize-b6u9v9 ,
maize-a0a3l6e780 ,
maize-b4fv80 ,
maize-a0a3l6d913 Abstract
Maize is an important crop with a high level of genome diversity and heterosis. The genome sequence of a typical female line, B73, was previously released. Here, we report a de novo genome assembly of a corresponding male representative line, Mo17. More than 96.4% of the 2,183 Mb assembled genome can be accounted for by 362 scaffolds in ten pseudochromosomes with 38,620 annotated protein-coding genes. Comparative analysis revealed large gene-order and gene structural variations: approximately 10% of the annotated genes were mutually nonsyntenic, and more than 20% of the predicted genes had either large-effect mutations or large structural variations, which might cause considerable protein divergence between the two inbred lines. Our study provides a high-quality reference-genome sequence of an important maize germplasm, and the intraspecific gene order and gene structural variations identified should have implications for heterosis and genome evolution.
Title: The B73 maize genome: complexity, diversity, and dynamicsSchnable PS , Ware D , Fulton RS , Stein JC , Wei F , Pasternak S , Liang C , Zhang J , Fulton L and Wilson RK <147 more author(s)> Schnable PS , Ware D , Fulton RS , Stein JC , Wei F , Pasternak S , Liang C , Zhang J , Fulton L , Graves TA , Minx P , Reily AD , Courtney L , Kruchowski SS , Tomlinson C , Strong C , Delehaunty K , Fronick C , Courtney B , Rock SM , Belter E , Du F , Kim K , Abbott RM , Cotton M , Levy A , Marchetto P , Ochoa K , Jackson SM , Gillam B , Chen W , Yan L , Higginbotham J , Cardenas M , Waligorski J , Applebaum E , Phelps L , Falcone J , Kanchi K , Thane T , Scimone A , Thane N , Henke J , Wang T , Ruppert J , Shah N , Rotter K , Hodges J , Ingenthron E , Cordes M , Kohlberg S , Sgro J , Delgado B , Mead K , Chinwalla A , Leonard S , Crouse K , Collura K , Kudrna D , Currie J , He R , Angelova A , Rajasekar S , Mueller T , Lomeli R , Scara G , Ko A , Delaney K , Wissotski M , Lopez G , Campos D , Braidotti M , Ashley E , Golser W , Kim H , Lee S , Lin J , Dujmic Z , Kim W , Talag J , Zuccolo A , Fan C , Sebastian A , Kramer M , Spiegel L , Nascimento L , Zutavern T , Miller B , Ambroise C , Muller S , Spooner W , Narechania A , Ren L , Wei S , Kumari S , Faga B , Levy MJ , McMahan L , Van Buren P , Vaughn MW , Ying K , Yeh CT , Emrich SJ , Jia Y , Kalyanaraman A , Hsia AP , Barbazuk WB , Baucom RS , Brutnell TP , Carpita NC , Chaparro C , Chia JM , Deragon JM , Estill JC , Fu Y , Jeddeloh JA , Han Y , Lee H , Li P , Lisch DR , Liu S , Liu Z , Nagel DH , McCann MC , SanMiguel P , Myers AM , Nettleton D , Nguyen J , Penning BW , Ponnala L , Schneider KL , Schwartz DC , Sharma A , Soderlund C , Springer NM , Sun Q , Wang H , Waterman M , Westerman R , Wolfgruber TK , Yang L , Yu Y , Zhang L , Zhou S , Zhu Q , Bennetzen JL , Dawe RK , Jiang J , Jiang N , Presting GG , Wessler SR , Aluru S , Martienssen RA , Clifton SW , McCombie WR , Wing RA , Wilson RK (- 147) Ref: Science, 326 :1112, 2009 : PubMed Abstract ESTHER: Schnable_2009_Science_326_1112 PubMedSearch: Schnable 2009 Science 326 1112 PubMedID: 19965430 Gene_locus related to this paper: maize-b4ffc7 ,
maize-b6u7e1 ,
maize-c0pcy5 ,
maize-c0pgf7 ,
maize-c0pgw1 ,
maize-c0pfl3 ,
maize-b4fpr7 ,
maize-k7vy73 ,
maize-a0a096swr3 ,
maize-k7v3i9 ,
maize-b6u9v9 ,
maize-a0a3l6e780 ,
maize-b4fv80 ,
maize-a0a1d6nse2 Abstract
We report an improved draft nucleotide sequence of the 2.3-gigabase genome of maize, an important crop plant and model for biological research. Over 32,000 genes were predicted, of which 99.8% were placed on reference chromosomes. Nearly 85% of the genome is composed of hundreds of families of transposable elements, dispersed nonuniformly across the genome. These were responsible for the capture and amplification of numerous gene fragments and affect the composition, sizes, and positions of centromeres. We also report on the correlation of methylation-poor regions with Mu transposon insertions and recombination, and copy number variants with insertions and/or deletions, as well as how uneven gene losses between duplicated regions were involved in returning an ancient allotetraploid to a genetically diploid state. These analyses inform and set the stage for further investigations to improve our understanding of the domestication and agricultural improvements of maize.
Other Papers
Zea mays (Maize) ZmB6T1C9 ZmAPT2 Zm.98376 Acyl-protein thioesterase 2