Gene_locus Report for: medtr-g7i6w5 Medicago truncatula (Barrel medic) (Medicago tribuloides) Pollen-specific protein SF21
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > fabids: N E > Fabales: N E > Fabaceae: N E > Papilionoideae: N E > Trifolieae: N E > Medicago: N E > Medicago truncatula: N E 6_AlphaBeta_hydrolase :
medtr-q1s6d2 Medicago truncatula (Barrel medic) alpha/beta hydrolase fold .
A85-EsteraseD-FGH :
medtr-b7fj60 Medicago truncatula (Barrel medic) (Medicago tribuloides) Putative uncharacterized protein ,
medtr-b7fl49 Medicago truncatula (Barrel medic) (Medicago tribuloides) Putative uncharacterized protein .
ABHD13-BEM46 :
medtr-a0a072urp3 Medicago truncatula (Barrel medic) (Medicago tribuloides). Alpha/beta-hydrolase superfamily protein .
ABHD17-depalmitoylase :
medtr-q2hux9 Medicago truncatula (Barrel medic) esterase/lipase/thioesterase .
ABHD18 :
medtr-a7uqu0 Medicago truncatula (Barrel medic) Putative uncharacterized protein .
Acidic_Lipase :
medtr-q6tgc0 Medicago truncatula (Barrel medic) triacylglycerol/steryl ester lipase-like protein .
AlphaBeta_hydrolase :
medtr-q1s193 Medicago truncatula (Barrel medic) alpha/beta hydrolase fold ,
medtr-q1sbn0 Medicago truncatula (Barrel medic) at1g13820 ,
medtr-q1t2k5 Medicago truncatula (Barrel medic) alpha/beta hydrolase fold .
Bodyguard :
medtr-a0a072vlq4 Medicago truncatula (Barrel medic) (Medicago tribuloides) Alpha/beta-hydrolase superfamily protein .
Carboxypeptidase_S10 :
medtr-b7fki4 Medicago truncatula (Barrel medic) (Medicago tribuloides) Uncharacterized protein ,
medtr-G7ILY3 Medicago truncatula (Barrel medic) (Medicago tribuloides) peptidase s10, serine carboxypeptidase ,
medtr-G7ILY5 Medicago truncatula (Barrel medic) (Medicago tribuloides) peptidase s10, serine carboxypeptidase ,
medtr-G7IT49 Medicago truncatula (Barrel medic) (Medicago tribuloides) peptidase s10, serine carboxypeptidase ,
medtr-G7IT50 Medicago truncatula (Barrel medic) (Medicago tribuloides) peptidase s10, serine carboxypeptidase ,
medtr-g7itl1 Medicago truncatula (Barrel medic) (Medicago tribuloides) Serine carboxypeptidase ,
medtr-g7iu67 Medicago truncatula (Barrel medic) (Medicago tribuloides) Serine carboxypeptidase ,
medtr-g7j641 Medicago truncatula (Barrel medic) (Medicago tribuloides) Serine carboxypeptidase II-3 ,
medtr-g7jtf8 Medicago truncatula (Barrel medic) (Medicago tribuloides) Serine carboxypeptidase ,
medtr-g7jtg2 Medicago truncatula (Barrel medic) (Medicago tribuloides) Serine carboxypeptidase ,
medtr-g7jtg4 Medicago truncatula (Barrel medic) (Medicago tribuloides) Serine carboxypeptidase ,
medtr-g7kem3 Medicago truncatula (Barrel medic) (Medicago tribuloides) Serine carboxypeptidase-like protein ,
medtr-G7KRJ6 Medicago truncatula (Barrel medic) peptidase s10, serine carboxypeptidase ,
medtr-g7ksx5 Medicago truncatula (Barrel medic) (Medicago tribuloides) Serine carboxypeptidase-like protein ,
medtr-g7leb3 Medicago truncatula (Barrel medic) (Medicago tribuloides) Uncharacterized protein ,
medtr-q1sgx5 Medicago truncatula (Barrel medic) (Medicago tribuloides) peptidase s10, serine carboxypeptidase ,
medtr-q6w6r6 Medicago truncatula (Barrel medic) (Medicago tribuloides) putative serine carboxypeptidase ,
medtr-scp1 Medicago truncatula (Barrel medic) (Medicago tribuloides). Serine carboxypeptidase 1 .
Chlorophyllase_Plant :
medtr-b7fmi1 Medicago truncatula (Barrel medic) (Medicago tribuloides) Putative uncharacterized protein ,
medtr-g7kml3 Medicago truncatula (Barrel medic) (Medicago tribuloides). Chlorophyllase-1 ,
medtr-a0a072vhg0 Medicago truncatula (Barrel medic) (Medicago tribuloides). Chlorophyllase .
CMBL :
medtr-q1t171 Medicago truncatula (Barrel medic) (Medicago tribuloides) . Carboxymethylenebutenolidase homolog .
DPP4N_Peptidase_S9 :
medtr-g7j6w0 Medicago truncatula (Barrel medic) Peptidase S9B, dipeptidylpeptidase IV terminal .
Duf_676 :
medtr-q1s3y4 Medicago truncatula (Barrel medic) hypothetical protein ,
medtr-q1s746 Medicago truncatula (Barrel medic) (esterase/lipase/thioesterase) ,
medtr-q1spi8 Medicago truncatula (Barrel medic) Alpha/beta-hydrolase superfamily protein ,
medtr-q1su07 Medicago truncatula (Barrel medic) Serine esterase family protein, putative ,
medtr-q1szf3 Medicago truncatula (Barrel medic) Serine esterase family protein .
Duf_1350 :
medtr-a0a072trw1 Medicago truncatula (Barrel medic) (Medicago tribuloides) Plant/MCA23-20 protein ,
medtr-a0a072vdn8 Medicago truncatula (Barrel medic) (Medicago tribuloides) DUF1350 family protein ,
medtr-g7ljd0 Medicago truncatula (Barrel medic) (Medicago tribuloides), Putative uncharacterized protein .
Epoxide_hydrolase :
medtr-a2q320 Medicago truncatula (Barrel medic) (Medicago tribuloides) Epoxide hydrolase ,
medtr-a2q321 Medicago truncatula (Barrel medic) (Medicago tribuloides) Epoxide hydrolase ,
medtr-b7fjm9 Medicago truncatula (Barrel medic) (Medicago tribuloides) Putative uncharacterized protein ,
medtr-b7fjp5 Medicago truncatula (Barrel medic) (Medicago tribuloides) Putative uncharacterized protein ,
medtr-b7fka3 Medicago truncatula (Barrel medic) (Medicago tribuloides) Putative uncharacterized protein ,
medtr-q1sfz2 Medicago truncatula (Barrel medic) epoxide hydrolase (alpha/beta hydrolase fold) ,
medtr-q1sfz3 Medicago truncatula (Barrel medic) alpha/beta hydrolase fold (alpha/beta hydrolase) ,
medtr-q1sg67 Medicago truncatula (Barrel medic) alpha/beta hydrolase fold ,
medtr-q1sql8 Medicago truncatula (Barrel medic) alpha/beta hydrolase fold .
FSH1 :
medtr-q1sd74 Medicago truncatula (Barrel medic)(Medicago tribuloides); Cicer arietinum (Chickpea) (Garbanzo) hypothetical protein .
Glutamyl_Peptidase_S9 :
medtr-g7kst7 Medicago truncatula (Barrel medic) (Medicago tribuloides). Glutamyl endopeptidase, putative .
Hydroxynitrile_lyase :
medtr-b7fix6 Medicago truncatula (Barrel medic) (Medicago tribuloides) Putative uncharacterized protein ,
medtr-g7k9e1 Medicago truncatula (Barrel medic) (Medicago tribuloides) Methyl jasmonate esterase ,
medtr-g7k9e3 Medicago truncatula (Barrel medic) (Medicago tribuloides) Uncharacterized protein ,
medtr-g7k9e5 Medicago truncatula (Barrel medic) (Medicago tribuloides) Esterase PIR7B ,
medtr-g7k9e8 Medicago truncatula (Barrel medic) (Medicago tribuloides) Polyneuridine-aldehyde esterase ,
medtr-g7k9e9 Medicago truncatula (Barrel medic) (Medicago tribuloides) Pentatricopeptide repeat-containing protein ,
medtr-g7lbp2 Medicago truncatula (Barrel medic) (Medicago tribuloides) Methyl jasmonate esterase ,
medtr-g7lch3 Medicago truncatula (Barrel medic) (Medicago tribuloides) Methyl jasmonate esterase ,
medtr-i3sgp2 Medicago truncatula (Barrel medic) (Medicago tribuloides) Uncharacterized protein .
Lipase_3 :
medtr-q1sda9 Medicago truncatula (Barrel medic) lipase, class 3 .
LYsophospholipase_carboxylesterase :
medtr-q1s407 Medicago truncatula (Barrel medic) phospholipase/carboxylesterase .
Monoglyceridelipase_lysophospholip :
medtr-q1rus1 Medicago truncatula (Barrel medic) alpha/beta hydrolase ,
medtr-q1s4m1 Medicago truncatula (Barrel medic) alpha/beta hydrolase .
Ndr_family :
medtr-g7ib94 Medicago truncatula (Barrel medic) (Medicago tribuloides) Pollen-specific protein SF21 ,
medtr-g7ljk8 Medicago truncatula (Barrel medic) (Medicago tribuloides) Pollen specific protein SF21 .
PC-sterol_acyltransferase :
medtr-q1s687 Medicago truncatula (Barrel medic) lecithin:cholesterol acyltransferase ,
medtr-q6xsh3 Medicago truncatula (Barrel medic) lecithine cholesterol acyltransferase-like protein ,
medtr-Q8GZM5 Medicago truncatula (Barrel medic) (Medicago tribuloides) putative phosphatidylcholine acyltransferase ,
medtr-q71ce5 Medicago truncatula (Barrel medic) lecithine cholesterol acyltransferase-like protein .
Pectinacetylesterase-Notum :
medtr-b7fkl0 Medicago truncatula (Barrel medic) (Medicago tribuloides) Putative uncharacterized protein ,
medtr-q2hru2 Medicago truncatula (Barrel medic) (Medicago tribuloides) Pectinacetylesterase ,
medtr-g7kvg4 Medicago truncatula (Barrel medic) (Medicago tribuloides). Pectinacetylesterase family protein ,
medtr-g7iam1 Medicago truncatula (Barrel medic) (Medicago tribuloides). Pectinacetylesterase family protein ,
medtr-g7iam3 Medicago truncatula (Barrel medic) (Medicago tribuloides). Pectinacetylesterase family protein ,
medtr-g7l754 Medicago truncatula (Barrel medic) (Medicago tribuloides). Pectinacetylesterase family protein ,
medtr-g7jr41 Medicago truncatula (Barrel medic) (Medicago tribuloides). Pectinacetylesterase family protein ,
medtr-g7l4f5 Medicago truncatula (Barrel medic) (Medicago tribuloides). Pectinacetylesterase family protein ,
medtr-i3scp6 Medicago truncatula (Barrel medic) (Medicago tribuloides). Uncharacterized protein ,
medtr-g7l755 Medicago truncatula (Barrel medic) (Medicago tribuloides). Pectinacetylesterase family protein ,
medtr-a0a072vyl4 Medicago truncatula (Barrel medic) (Medicago tribuloides). Pectinacetylesterase family protein ,
medtr-g7jwk8 Medicago truncatula (Barrel medic) (Medicago tribuloides). Pectinacetylesterase family protein .
Pheophytinase :
medtr-g7izm0 Medicago truncatula (Barrel medic) (Medicago tribuloides) Alpha/beta hydrolase-fold family protein .
Plant_carboxylesterase :
medtr-q1s1e6 Medicago truncatula (Barrel medic) esterase/lipase/thioesterase ,
medtr-q1s5d8 Medicago truncatula (Barrel medic) (Medicago tribuloides) alpha/beta hydrolase fold, putative (esterase/lipase/thioesterase) ,
medtr-q1smf6 Medicago truncatula (Barrel medic) esterase/lipase/thioesterase ,
medtr-q1smf7 Medicago truncatula (Barrel medic) esterase/lipase/thioesterase ,
medtr-q1szi1 Medicago truncatula (Barrel medic) lipolytic enzyme ,
medtr-q1szi4 Medicago truncatula (Barrel medic) esterase/lipase/thioesterase ,
medtr-q1szi7 Medicago truncatula (Barrel medic) esterase/lipase/thioesterase ,
medtr-q1szi9 Medicago truncatula (Barrel medic) esterase/lipase/thioesterase ,
medtr-q2hrx9 Medicago truncatula (Barrel medic) esterase/lipase/thioesterase ,
medtr-a0a072uuf6 Medicago truncatula (Barrel medic) (Medicago tribuloides). Putative carboxylesterase ,
medtr-g7zzc3 Medicago truncatula (Barrel medic) (Medicago tribuloides). Putative carboxylesterase ,
medtr-g7ie19 Medicago truncatula (Barrel medic) (Medicago tribuloides). 2-hydroxyisoflavanone dehydratase .
Plant_lipase_EDS1-like :
medtr-q1s9m3 Medicago truncatula (Barrel medic) Enhanced disease susceptibility protein ,
medtr-a0a072v056 Medicago truncatula (Barrel medic) (Medicago tribuloides).. Enhanced disease susceptibility protein .
Proline_iminopeptidase :
medtr-b7fl89 Medicago truncatula (Barrel medic) (Medicago tribuloides). Putative uncharacterized protein .
RsbQ-like :
medtr-MtD14 Medicago truncatula (Barrel medic) (Medicago tribuloides) D14 Sigma factor sigb regulation rsbq-like protein Medtr1g018320 ,
medtr-b7fk41 Medicago truncatula (Barrel medic) (Medicago tribuloides) KAI2A Putative alpha/Beta hydrolase, strigolactone esterase Medtr5g016150 ,
medtr-q1sed4 Medicago truncatula (Barrel medic) KAI2B Medtr4g095310 alpha/beta hydrolase fold .
Triacylglycerol-lipase-OBL1-like :
medtr-q1s2a7 Medicago truncatula (Barrel medic)(Medicago tribuloides) lipase, putative ,
medtr-q1sh82 Medicago truncatula (Barrel medic)(Medicago tribuloides) lipase, class 3 ,
medtr-a0a072u5k5 Medicago truncatula (Barrel medic) (Medicago tribuloides). Triacylglycerol lipase-like protein .
UCP031088 :
medtr-a0a072vrv9 Medicago truncatula (Barrel medic) (Medicago tribuloides). Alpha/beta fold hydrolase ,
medtr-g7kmk5 Medicago truncatula (Barrel medic) (Medicago tribuloides). Putative alpha/Beta hydrolase Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: medtr-g7i6w5 Colored MSA for Ndr_family (raw)
MRNSTDSVSIDIDLIPLGGKECIVKTSKGSVSVLICGDQDKPALITYPDV
ALNYLSCFQGLLFCPEAASLMLHNFCIYHIDAPGHELGADVISSDEPLLC
VDDLADQVAEVLDYFGLREVMCLGVTAGAYILTLFAMKYKERVLGLILVS
PICKGPSWTEWIYNKVLMNLLYFYGMCGLLKECLLQRYFSKELRCSIQGA
ESDVIQTCRRLLDERQSLNVMRFLQAVNARHDLSEGLKNLQCKTLIFAGD
SSPFHAESIYMSEKIDSKICALVEVQACGSLVTEEHPISMIVPIERFLMG
FGFHRQPHFASSSSNGSTSPASPSRHAIVAPELLSQESLGIKLKPIRTRV
RVET
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M R N S T D S V S I D I D L I P L G G K E C I V K T S K G S V S V L I C G D Q D K P A L I T Y P D V A L N Y L S C F Q G L L F C P E A A S L M L H N F C I Y H I D A P G H E L G A D V I S S D E P L L C V D D L A D Q V A E V L D Y F G L R E V M C L G V T A G A Y I L T L F A M K Y K E R V L G L I L V S P I C K G P S W T E W I Y N K V L M N L L Y F Y G M C G L L K E C L L Q R Y F S K E L R C S I Q G A E S D V I Q T C R R L L D E R Q S L N V M R F L Q A V N A R H D L S E G L K N L Q C K T L I F A G D S S P F H A E S I Y M S E K I D S K I C A L V E V Q A C G S L V T E E H P I S M I V P I E R F L M G F G F H R Q P H F A S S S S N G S T S P A S P S R H A I V A P E L L S Q E S L G I K L K P I R T R V R V E T
Reference
Title: The Medicago genome provides insight into the evolution of rhizobial symbiosesYoung ND , Debelle F , Oldroyd GE , Geurts R , Cannon SB , Udvardi MK , Benedito VA , Mayer KF , Gouzy J and Roe BA <114 more author(s)> Young ND , Debelle F , Oldroyd GE , Geurts R , Cannon SB , Udvardi MK , Benedito VA , Mayer KF , Gouzy J , Schoof H , Van de Peer Y , Proost S , Cook DR , Meyers BC , Spannagl M , Cheung F , De Mita S , Krishnakumar V , Gundlach H , Zhou S , Mudge J , Bharti AK , Murray JD , Naoumkina MA , Rosen B , Silverstein KA , Tang H , Rombauts S , Zhao PX , Zhou P , Barbe V , Bardou P , Bechner M , Bellec A , Berger A , Berges H , Bidwell S , Bisseling T , Choisne N , Couloux A , Denny R , Deshpande S , Dai X , Doyle JJ , Dudez AM , Farmer AD , Fouteau S , Franken C , Gibelin C , Gish J , Goldstein S , Gonzalez AJ , Green PJ , Hallab A , Hartog M , Hua A , Humphray SJ , Jeong DH , Jing Y , Jocker A , Kenton SM , Kim DJ , Klee K , Lai H , Lang C , Lin S , Macmil SL , Magdelenat G , Matthews L , McCorrison J , Monaghan EL , Mun JH , Najar FZ , Nicholson C , Noirot C , O'Bleness M , Paule CR , Poulain J , Prion F , Qin B , Qu C , Retzel EF , Riddle C , Sallet E , Samain S , Samson N , Sanders I , Saurat O , Scarpelli C , Schiex T , Segurens B , Severin AJ , Sherrier DJ , Shi R , Sims S , Singer SR , Sinharoy S , Sterck L , Viollet A , Wang BB , Wang K , Wang M , Wang X , Warfsmann J , Weissenbach J , White DD , White JD , Wiley GB , Wincker P , Xing Y , Yang L , Yao Z , Ying F , Zhai J , Zhou L , Zuber A , Denarie J , Dixon RA , May GD , Schwartz DC , Rogers J , Quetier F , Town CD , Roe BA (- 114) Ref: Nature, 480 :520, 2011 : PubMed Abstract ESTHER: Young_2011_Nature_480_520 PubMedSearch: Young 2011 Nature 480 520 PubMedID: 22089132 Gene_locus related to this paper: medtr-b7fki4 ,
medtr-b7fmi1 ,
medtr-g7itl1 ,
medtr-g7iu67 ,
medtr-g7izm0 ,
medtr-g7j641 ,
medtr-g7jtf8 ,
medtr-g7jtg2 ,
medtr-g7jtg4 ,
medtr-g7kem3 ,
medtr-g7kml3 ,
medtr-g7ksx5 ,
medtr-g7leb3 ,
medtr-q1s5d8 ,
medtr-q1s9m3 ,
medtr-q1t171 ,
medtr-g7k9e1 ,
medtr-g7k9e3 ,
medtr-g7k9e5 ,
medtr-g7k9e8 ,
medtr-g7k9e9 ,
medtr-g7lbp2 ,
medtr-g7lch3 ,
medtr-g7ib94 ,
medtr-g7ljk8 ,
medtr-g7i6w5 ,
medtr-g7kvg4 ,
medtr-g7iam1 ,
medtr-g7iam3 ,
medtr-g7l754 ,
medtr-g7jr41 ,
medtr-g7l4f5 ,
medtr-g7l755 ,
medtr-a0a072vyl4 ,
medtr-g7jwk8 ,
medtr-a0a072vhg0 ,
medtr-a0a072vrv9 ,
medtr-g7kmk5 ,
medtr-a0a072uuf6 ,
medtr-a0a072urp3 ,
medtr-g7zzc3 ,
medtr-g7ie19 ,
medtr-g7kst7 ,
medtr-a0a072u5k5 ,
medtr-a0a072v056 ,
medtr-scp1 Abstract
Legumes (Fabaceae or Leguminosae) are unique among cultivated plants for their ability to carry out endosymbiotic nitrogen fixation with rhizobial bacteria, a process that takes place in a specialized structure known as the nodule. Legumes belong to one of the two main groups of eurosids, the Fabidae, which includes most species capable of endosymbiotic nitrogen fixation. Legumes comprise several evolutionary lineages derived from a common ancestor 60 million years ago (Myr ago). Papilionoids are the largest clade, dating nearly to the origin of legumes and containing most cultivated species. Medicago truncatula is a long-established model for the study of legume biology. Here we describe the draft sequence of the M. truncatula euchromatin based on a recently completed BAC assembly supplemented with Illumina shotgun sequence, together capturing approximately 94% of all M. truncatula genes. A whole-genome duplication (WGD) approximately 58 Myr ago had a major role in shaping the M. truncatula genome and thereby contributed to the evolution of endosymbiotic nitrogen fixation. Subsequent to the WGD, the M. truncatula genome experienced higher levels of rearrangement than two other sequenced legumes, Glycine max and Lotus japonicus. M. truncatula is a close relative of alfalfa (Medicago sativa), a widely cultivated crop with limited genomics tools and complex autotetraploid genetics. As such, the M. truncatula genome sequence provides significant opportunities to expand alfalfa's genomic toolbox.
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