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Gene_locus Report for: micpc-c1mh04

Micromonas pusilla (strain CCMP1545) (Picoplanktonic green alga) Predicted protein

Relationship
Family|Duf_1350
Block| X
Position in NCBI Life Tree|Micromonas pusilla CCMP1545
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Chlorophyta: N E > prasinophytes: N E > Mamiellophyceae: N E > Mamiellales: N E > Mamiellaceae: N E > Micromonas: N E > Micromonas pusilla: N E > Micromonas pusilla CCMP1545: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : GG663735
1 UniProt : C1MH04
1 UniProt : C1MH04
1 Interpro : C1MH04
1 Pfam : C1MH04
1 PIRSF : C1MH04
1 SUPERFAM : C1MH04
Sequence
Graphical view for this peptide sequence: micpc-c1mh04
Colored MSA for Duf_1350 (raw)
SSSSPTDAFAALEALLTAASESSGPSSARGWKELEGAWVLPPPNGRAAVG
VVHFIGGAFVGASPQLTYRLLLESLSARGDLTIVATPYAIGFDHLRLADE
IQFVFDRCVRSLGKEYDTLPVYGVGHSMGALMHALIGSRYKLPDRVGNVL
ISFNNKPATDAVPLFTPVVAPGLQARSNLSPLFNGISSSPLRAPARAIDA
SLRARAPPVVRELLPVLDQLEPVFLEVANGANEFVPKPDDSKDLVRKYYA
VKRNLLLRFRDDTIDETGVLASTLTDGAAISESLDLSVKSLAGDHVRPCR
QDVGADVPPELASPLIETGNLISGVA
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

SSSSPTDAFAALEALLTAASESSGPSSARGWKELEGAWVLPPPNGRAAVG
VVHFIGGAFVGASPQLTYRLLLESLSARGDLTIVATPYAIGFDHLRLADE
IQFVFDRCVRSLGKEYDTLPVYGVGHSMGALMHALIGSRYKLPDRVGNVL
ISFNNKPATDAVPLFTPVVAPGLQARSNLSPLFNGISSSPLRAPARAIDA
SLRARAPPVVRELLPVLDQLEPVFLEVANGANEFVPKPDDSKDLVRKYYA
VKRNLLLRFRDDTIDETGVLASTLTDGAAISESLDLSVKSLAGDHVRPCR
QDVGADVPPELASPLIETGNLISGVA


Reference
    Title: Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
    Worden AZ, Lee JH, Mock T, Rouze P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle E and Grigoriev IV <41 more author(s)>
    Ref: Science, 324:268, 2009 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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