morsp-deh1

 
Moraxella sp. B Comamonas acidovorans plasmid dehH1 gene for haloacetate dehalogenase H-1, complete cds

Comment
Comamonas acidovorans Q01398 D90422 for strain B Q7DI61 AB063332 AB049198 Comamonas acidovorans (Pseudomonas acidovorans) identical Sota et al


Relationship
Block X
Moraxella sp. position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Pseudomonadales: N E > Moraxellaceae: N E > Moraxella: N E > Moraxella sp.: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



3 Genbank : D90422, AB049198, AB063332
1 UniProt : Q01398
1 Ncbi-nid : 216772
1 Ncbi-pid : 216773
2 UniProtTrembl : Q01398, Q7DI61
2 Interpro : Q01398, Q7DI61
2 Prodom : Q01398, Q7DI61
2 Pfam : Q01398, Q7DI61
2 PIRSF : Q01398, Q7DI61
2 SUPERFAM : Q01398, Q7DI61
2 QuickSwissBlast : Q01398, Q7DI61
 
Sequence
Graphical view for this peptide sequence: morsp-deh1
Colored MSA for Haloacetate_dehalogenase (raw)
MDFPGFKNSTVTVDGVDIAYTVSGEGPPVLMLHGFPQNRAMWARVAPQLA
EHHTVVCADLRGYGDSDKPKCLPDRSNYSFRTFAHDQLCVMRHLGFERFH
LVGHDRGGRTGHRMALDHPEAVLSLTVMDIVPTYAMFMNTNRLVAASYWH
WYFLQQPEPFPEHMIGQDPDFFYETCLFGWGATKVSDFDQQMLNAYRESW
RNPAMIHGSCSDYRAAATIDLEHDSADIQRKVECPTLVFYGSKGQMGQLF
DIPAEWAKRCNNTTNASLPGGHFFVDQFPAETSEILLKFLARNG
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MDFPGFKNSTVTVDGVDIAYTVSGEGPPVLMLHGFPQNRAMWARVAPQLA
EHHTVVCADLRGYGDSDKPKCLPDRSNYSFRTFAHDQLCVMRHLGFERFH
LVGHDRGGRTGHRMALDHPEAVLSLTVMDIVPTYAMFMNTNRLVAASYWH
WYFLQQPEPFPEHMIGQDPDFFYETCLFGWGATKVSDFDQQMLNAYRESW
RNPAMIHGSCSDYRAAATIDLEHDSADIQRKVECPTLVFYGSKGQMGQLF
DIPAEWAKRCNNTTNASLPGGHFFVDQFPAETSEILLKFLARNG

Graphical view for this nucleotide DNA sequence (1579 bp): morsp-deh1



References
    Title: Structure of haloacetate-catabolic IncP-1beta plasmid pUO1 and genetic mobility of its residing haloacetate-catabolic transposon
    Sota M, Kawasaki H, Tsuda M
    Ref: Journal of Bacteriology, 185:6741, 2003 : PubMed

            

    Title: Characterization of a class II defective transposon carrying two haloacetate dehalogenase genes from Delftia acidovorans plasmid pUO1
    Sota M, Endo M, Nitta K, Kawasaki H, Tsuda M
    Ref: Applied Environmental Microbiology, 68:2307, 2002 : PubMed

            

    Title: Lack of homology between two haloacetate dehalogenase genes encoded on a plasmid from Moraxella sp. strain B
    Kawasaki H, Tsuda K, Matsushita I, Tonomura K
    Ref: J Gen Microbiol, 138:1317, 1992 : PubMed

            


Other Papers


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Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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