Gene_Locus Report

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Gene_locus Report for: mycab-b1mch4

Mycobacterium abscessus Mycobacterium massiliense; Mycobacterium immunogenum; Mycobacterium franklinii; Mycobacterium saopaulense Probable carboxylesterase (LipT)

Comment
Other strains: Mycobacterium abscessus ; BD; M93; M94; 4S-0726-RB; 5S-0304; 5S-0422; 2B-0107; 2B-0912-R; 2B-0307; 1S-151-0930; 2B-1231; 2B-0912-S; 4S-0206; 2B-0626; 1S-152-0914; 6G-0728-S; 1S-154-0310; CCUG 48898; GO 06; 1S-153-0915; 3A-0810-R; 3A-0930-S; 4S-0116-R; 3A-0122-R; 3A-0119-R; 6G-0212; 6G-1108; 5S-1215; 6G-0125-R; 4S-0116-S; 3A-0930-R; 3A-0731; 3A-0122-S; 4S-0303; 5S-0817; 5S-0708; 4S-0726-RA; 5S-0921; 5S-1212; 5S-0421; 6G-0125-S; 6G-0728-R; V06705; subsp. bolletii BD; CRM-0020; 50594; 1513; 103;;MAB_082312_2258; MAB_091912_2446; MAB_110811_2726; MAB_110811_1470; MAB_082312_2272; MAB_091912_2455; MAB_030201_1075; MAB_030201_1061; 21; 1948) Mycobacterium massiliense (47J26; Mycobacterium chelonae 1518; Mycobacterium immunogenum; Mycobacterium chelonae; Mycobacterium franklinii; Mycobacterium saopaulense


Relationship
Family|Carb_B_Bacteria
Block| C
Position in NCBI Life Tree|Mycobacterium abscessus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Actinobacteria [phylum]: N E > Actinobacteria [class]: N E > Corynebacteriales: N E > Mycobacteriaceae: N E > Mycobacterium: N E > Mycobacterium chelonae group: N E > Mycobacterium abscessus subgroup: N E > Mycobacterium abscessus: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 69 more: CU458896, AGQU01000001, AHAR01000011
>3 UniProt links 1 more: B1MCH4, R4UNC1, X8DPI2
>3 UniProt links 8 more: B1MCH4, R4UNC1, X8DPI2
>3 Interpro links 8 more: B1MCH4, R4UNC1, X8DPI2
>3 Pfam links 8 more: B1MCH4, R4UNC1, X8DPI2
>3 PIRSF links 8 more: B1MCH4, R4UNC1, X8DPI2
>3 SUPERFAM links 8 more: B1MCH4, R4UNC1, X8DPI2
Sequence
Graphical view for this peptide sequence: mycab-b1mch4
Colored MSA for Carb_B_Bacteria (raw)
MYPEKTRGNFPAPPLRLCGPVTADRTTIRYVAVDVALPTVVRTPLGALRG
AIEGGVSVWRGVPYAQQPVEQLRFLAPVPLEPWEGVRDAIEHAPLPPQGK
SFVGAGRDDPKIRGEECLTVTVWSPDVHASLPVMVWIPGGAFVFGAGQLE
LYSGARLAANGNVVVVNVTYRLGALGGLELSALGEGFDDNLALRDQMAAL
TWVRDNIAAFGGDPDHVTIFGESAGATSVLALLASPAAEGLFGRAIAQSP
ALPLIADKALRDKRAHRYLELLDVTDPSRLKVLPQRELRRGAAKLQIESA
TETPVLGYGLAHGTELLPYHPIEAARRGEVHQVPLIIGSNSHEASMFARV
KPPMLPTTEPTVNGYFNRIGPEYQDAIIAAYPGYPSRQALVAVGSDAMFA
APMWAFADAYSAFVDTYMYRFDHTAWGLKLLGLGATHGSEIVHVQHSYGS
FVGMLLSPLGARMMPSVGRRMQRAWLDFATGAGPEDWPTYGADGRRTRII
RSRSDVTVEDPDSVRRIAWAQVH
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MYPEKTRGNFPAPPLRLCGPVTADRTTIRYVAVDVALPTVVRTPLGALRG
AIEGGVSVWRGVPYAQQPVEQLRFLAPVPLEPWEGVRDAIEHAPLPPQGK
SFVGAGRDDPKIRGEECLTVTVWSPDVHASLPVMVWIPGGAFVFGAGQLE
LYSGARLAANGNVVVVNVTYRLGALGGLELSALGEGFDDNLALRDQMAAL
TWVRDNIAAFGGDPDHVTIFGESAGATSVLALLASPAAEGLFGRAIAQSP
ALPLIADKALRDKRAHRYLELLDVTDPSRLKVLPQRELRRGAAKLQIESA
TETPVLGYGLAHGTELLPYHPIEAARRGEVHQVPLIIGSNSHEASMFARV
KPPMLPTTEPTVNGYFNRIGPEYQDAIIAAYPGYPSRQALVAVGSDAMFA
APMWAFADAYSAFVDTYMYRFDHTAWGLKLLGLGATHGSEIVHVQHSYGS
FVGMLLSPLGARMMPSVGRRMQRAWLDFATGAGPEDWPTYGADGRRTRII
RSRSDVTVEDPDSVRRIAWAQVH


References
5 more
    Title: Whole-genome sequence of the emerging pathogen Mycobacterium abscessus strain 47J26
    Chan J, Halachev M, Yates E, Smith G, Pallen M
    Ref: Journal of Bacteriology, 194:549, 2012 : PubMed

            

    Title: Draft genome sequence of Mycobacterium abscessus subsp. bolletii BD(T)
    Choi GE, Cho YJ, Koh WJ, Chun J, Cho SN, Shin SJ
    Ref: Journal of Bacteriology, 194:2756, 2012 : PubMed

            

    Title: Genome sequence of the Mycobacterium abscessus strain M93
    Choo SW, Wong YL, Yusoff AM, Leong ML, Wong GJ, Ong CS, Ng KP, Ngeow YF
    Ref: Journal of Bacteriology, 194:3278, 2012 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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