Gene_Locus Report

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Gene_locus Report for: mycab-b1mdu3

Mycobacterium abscessus, Mycobacterium massiliense, Mycobacterium chelonae, Probable carboxylesterase LipT

Comment
Other strains: Mycobacterium abscessus (47J26; subsp. bolletii BD; M94; M93, 4S-0303; 5S-0304; 5S-1212; CCUG 48898; GO 06; 5S-1215; 5S-0817; 5S-0708; 2B-0307; 5S-0421; 2B-0912-R; 2B-0626; 2B-1231; CCUG 48898 = JCM 15300; 3A-0731; 3A-0122-S; 2B-0912-S; 6G-0728-R; 6G-0212; 1S-154-0310; 1S-152-0914; 6G-0125-R; 6G-0125-S; 4S-0116-S; 3A-0930-S; 5S-0422 ; 4S-0726-RA; 1S-153-0915; 1S-151-0930; 2B-0107; 3A-0810-R; 6G-1108; 6G-0728-S; 5S-0921; 3A-0930-R; 3A-0122-R; 4S-0116-R; 3A-0119-R; 4S-0206; 4S-0726-RB; V06705; MAB_082312_2258; MAB_091912_2446; MAB_110811_2726; MAB_110811_1470; MAB_082312_2272; MAB_091912_2455; MAB_030201_1075; MAB_030201_1061; 21; 1948; subsp. bolletii CRM-0020; 50594;1513; 103), Mycobacterium massiliense; Mycobacterium chelonae 1518


Relationship
Family|Carb_B_Bacteria
Block| C
Position in NCBI Life Tree|Mycobacterium abscessus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Actinobacteria [phylum]: N E > Actinobacteria [class]: N E > Corynebacteriales: N E > Mycobacteriaceae: N E > Mycobacterium: N E > Mycobacterium chelonae group: N E > Mycobacterium abscessus subgroup: N E > Mycobacterium abscessus: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 69 more: CU458896, AGQU01000001, AHAR01000013
>3 UniProt links 1 more: B1MDU3, R4UDP6, X8DNW4
>3 UniProt links 6 more: B1MDU3, R4UDP6, X8DNW4
>3 Interpro links 6 more: B1MDU3, R4UDP6, X8DNW4
>3 Pfam links 6 more: B1MDU3, R4UDP6, X8DNW4
>3 PIRSF links 6 more: B1MDU3, R4UDP6, X8DNW4
>3 SUPERFAM links 6 more: B1MDU3, R4UDP6, X8DNW4
Sequence
Graphical view for this peptide sequence: mycab-b1mdu3
Colored MSA for Carb_B_Bacteria (raw)
MASAPLRVVTNNGEVEGFVRRGMRRFRGIPYAEPPVGPLRLRAPRPAQPW
EGVRRCKRFGAAPYQPKIFTPQKQRSEDCLTLNVVAPEQLPDGPLPVMFY
IYGGGYFLGSSSSPPYEGSILARRGCVYVSANYRVGAFGAFDLSSLSDDR
HVIESNLYLRDLVLALQWVRENIAAFGGDPENVTIFGESAGGSGVETLMA
TPAAAGLFHKAIIQSTASGLAADADSVAYDARRFAEILGATSDNAAATVL
NASPRQLLRAQRKLIAEGGFPFGPSVDGNYLPKKPVESIEGGEAHRVPLI
IGSNADEAKLFTKAIKVMPLSEAEQLEILGRGGPGYQERITAAYVGYPSM
QARLRLAGDMFFTSSVWRIAQAHQHFAPVYVYQFDYAPWPVRAAGLEGSH
ATELLAVFGNYRGPAGPILTGSFTHRDASRVVDDVQQRWVAFARNGVPSG
DWPPYRGPDWPVLVFDRELRVEQNLGGDRRTVWDGFRLSIPSRIPRAS
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MASAPLRVVTNNGEVEGFVRRGMRRFRGIPYAEPPVGPLRLRAPRPAQPW
EGVRRCKRFGAAPYQPKIFTPQKQRSEDCLTLNVVAPEQLPDGPLPVMFY
IYGGGYFLGSSSSPPYEGSILARRGCVYVSANYRVGAFGAFDLSSLSDDR
HVIESNLYLRDLVLALQWVRENIAAFGGDPENVTIFGESAGGSGVETLMA
TPAAAGLFHKAIIQSTASGLAADADSVAYDARRFAEILGATSDNAAATVL
NASPRQLLRAQRKLIAEGGFPFGPSVDGNYLPKKPVESIEGGEAHRVPLI
IGSNADEAKLFTKAIKVMPLSEAEQLEILGRGGPGYQERITAAYVGYPSM
QARLRLAGDMFFTSSVWRIAQAHQHFAPVYVYQFDYAPWPVRAAGLEGSH
ATELLAVFGNYRGPAGPILTGSFTHRDASRVVDDVQQRWVAFARNGVPSG
DWPPYRGPDWPVLVFDRELRVEQNLGGDRRTVWDGFRLSIPSRIPRAS


References
6 more
    Title: Whole-genome sequence of the emerging pathogen Mycobacterium abscessus strain 47J26
    Chan J, Halachev M, Yates E, Smith G, Pallen M
    Ref: Journal of Bacteriology, 194:549, 2012 : PubMed

            

    Title: Draft genome sequence of Mycobacterium abscessus subsp. bolletii BD(T)
    Choi GE, Cho YJ, Koh WJ, Chun J, Cho SN, Shin SJ
    Ref: Journal of Bacteriology, 194:2756, 2012 : PubMed

            

    Title: Genome sequence of the Mycobacterium abscessus strain M93
    Choo SW, Wong YL, Yusoff AM, Leong ML, Wong GJ, Ong CS, Ng KP, Ngeow YF
    Ref: Journal of Bacteriology, 194:3278, 2012 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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