Gene_locus Report for: nocfa-q5ysq0 Nocardia farcinica Putative uncharacterized protein
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Actinobacteria [phylum]: N E > Actinobacteria [class]: N E > Corynebacteriales: N E > Nocardiaceae: N E > Nocardia: N E > Nocardia farcinica: N E 6_AlphaBeta_hydrolase :
nocfa-q5yne7 Nocardia farcinica putative hydrolase ,
nocfa-q5ynm0 Nocardia farcinica Putative uncharacterized protein ,
nocfa-q5yp33 Nocardia farcinica putative hydrolase ,
nocfa-q5ypg5 Nocardia farcinica putative hydrolase ,
nocfa-q5ypu9 Nocardia farcinica putative hydrolase ,
nocfa-q5ypw3 Nocardia farcinica putative hydrolase ,
nocfa-q5yr00 Nocardia farcinica putative hydrolase ,
nocfa-q5yr19 Nocardia farcinica putative hydrolase ,
nocfa-q5yrc7 Nocardia farcinica putative hydrolase ,
nocfa-q5yrn9 Nocardia farcinica hypothetical protein ,
nocfa-q5yrv3 Nocardia farcinica hypothetical protein ,
nocfa-q5yrz4 Nocardia farcinica putative hydrolase ,
nocfa-q5yus3 Nocardia farcinica Putative uncharacterized protein ,
nocfa-q5yus4 Nocardia farcinica Putative uncharacterized protein ,
nocfa-q5yvi0 Nocardia farcinica hypothetical protein ,
nocfa-q5yvr2 Nocardia farcinica hypothetical protein ,
nocfa-q5yvw8 Nocardia farcinica putative transcriptional regulator ,
nocfa-q5yw34 Nocardia farcinica putative hydrolase ,
nocfa-q5yy59 Nocardia farcinica putative hydrolase ,
nocfa-q5yz89 Nocardia farcinica hypothetical protein ,
nocfa-q5yzd7 Nocardia farcinica putative hydrolase ,
nocfa-q5yzh3 Nocardia farcinica putative hydrolase ,
nocfa-q5z1b6 Nocardia farcinica putative hydrolase ,
nocfa-q5z1d9 Nocardia farcinica putative hydrolase ,
nocfa-q5z1g6 Nocardia farcinica putative hydrolase ,
nocfa-q5z2e7 Nocardia farcinica putative hydrolase ,
nocfa-q5z2s1 Nocardia farcinica putative hydrolase ,
nocfa-q5z2x4 Nocardia farcinica putative hydrolase ,
nocfa-q5z2x8 Nocardia farcinica hypothetical protein .
A85-Est-Putative :
nocfa-q5yml0 Nocardia farcinica putative esterase .
A85-Mycolyl-transferase :
nocfa-q5yqy4 Nocardia farcinica putative esterase ,
nocfa-q5yrg2 Nocardia farcinica putative esterase ,
nocfa-q5yt17 Nocardia farcinica putative esterase ,
nocfa-q5yuq2 Nocardia farcinica putative esterase ,
nocfa-q5yvb8 Nocardia farcinica putative esterase ,
nocfa-q5ywt3 Nocardia farcinica putative esterase ,
nocfa-q5yx67 Nocardia farcinica putative esterase ,
nocfa-q5z0s0 Nocardia farcinica hypothetical protein ,
nocfa-q5z1x5 Nocardia farcinica putative esterase ,
nocfa-q5z2d5 Nocardia farcinica putative esterase ,
nocfa-q5z3g5 Nocardia farcinica putative esterase ,
nocfa-q5z3g6 Nocardia farcinica putative mycolyltransferase ,
nocfa-q5z3g7 Nocardia farcinica putative mycolyltransferase ,
nocfa-q5z3g8 Nocardia farcinica putative mycolyltransferase .
Abhydrolase_9 :
nocfa-q5yrt6 Nocardia farcinica Putative uncharacterized protein ,
nocfa-q5z2c2 Nocardia farcinica Putative uncharacterized protein ,
nocfr-a0a1c2b4y7 Nocardia farcinica Uncharacterized protein .
AlphaBeta_hydrolase :
nocfa-q5ytb0 Nocardia farcinica putative hydrolase ,
nocfa-q5ywe0 Nocardia farcinica putative hydrolase .
Bacterial_Est97 :
nocfa-q5ymz1 Nocardia farcinica (strain IFM 10152) Putative uncharacterized protein .
Carbon-carbon_bond_hydrolase :
nocfa-q5ys98 Nocardia farcinica putative hydrolase ,
nocfa-q5yzg2 Nocardia farcinica putative hydrolase ,
nocfa-q5yzu6 Nocardia farcinica putative hydrolase ,
nocfa-q5z2m6 Nocardia farcinica putative hydrolase .
Carb_B_Bacteria :
nocfa-q5yp18 Nocardia farcinica putative carboxyesterase ,
nocfa-q5ypm0 Nocardia farcinica putative carboxylesterase ,
nocfa-q5yqp8 Nocardia farcinica; Nocardia sp. putative carboxylesterase .
Cocaine_esterase :
nocfa-q5yp51 Nocardia farcinica putative peptidase ,
nocfa-q5yrp2 Nocardia farcinica putative esterase ,
nocfa-q5ytz8 Nocardia farcinica hypothetical protein .
Cutinase :
nocfa-q5ymb5 Nocardia farcinica hypothetical protein ,
nocfa-q5yn12 Nocardia farcinica hypothetical protein ,
nocfa-q5ytg1 Nocardia farcinica hypothetical protein ,
nocfa-q5yun7 Nocardia farcinica hypothetical protein ,
nocfa-q5z0l3 Nocardia farcinica hypothetical protein ,
nocfa-q5z3g3 Nocardia farcinica hypothetical protein ,
nocfa-q5z3q1 Nocardia farcinica hypothetical protein .
Dienelactone_hydrolase :
nocfa-q5yvk3 Nocardia farcinica putative hydrolase ,
nocfa-q5z3c1 Nocardia farcinica hypothetical protein .
Duf_3089 :
nocfa-q5yur6 Nocardia farcinica Putative uncharacterized protein .
Epoxide_hydrolase :
nocfa-q5ytr2 Nocardia farcinica putative hydrolase ,
nocfa-q5ytw9 Nocardia farcinica putative hydrolase ,
nocfa-q5yw53 Nocardia farcinica putative epoxide hydrolase ,
nocfa-q5z2z7 Nocardia farcinica putative hydrolase ,
nocfa-q5z3z4 Nocardia farcinica putative hydrolase .
Est9X :
nocfa-q5ynw5 Nocardia farcinica (strain IFM 10152) Uncharacterized protein .
Fungal-Bact_LIP :
nocfa-q5yna6 Nocardia farcinica putative lipase ,
nocfa-q5ynd1 Nocardia farcinica putative lipase ,
nocfa-q5yp07 Nocardia farcinica hypothetical protein ,
nocfa-q5yrq8 Nocardia farcinica putative lipase ,
nocfa-q5yun5 Nocardia farcinica putative lipase ,
nocfa-q5yv08 Nocardia farcinica hypothetical protein ,
nocfa-q5yx42 Nocardia farcinica putative lipase ,
nocfa-q5yzi0 Nocardia farcinica putative lipase .
Haloalkane_dehalogenase-HLD1 :
nocfa-q5ywh1 Nocardia farcinica Haloalkane_dehalogenase HLDIII .
Haloperoxidase :
nocfa-q5yp46 Nocardia farcinica putative hydrolase .
HNLyase_Bact :
nocfa-q5yum4 Nocardia farcinica putative hydrolase .
HOD-cofactorfree-dioxygenase :
nocfa-q5yp20 Nocardia farcinica (strain IFM 10152). Putative dioxygenase HQD-Nf .
Homoserine_transacetylase :
nocfa-metx Nocardia farcinica acetylase) (homoserine transacetylase) (hta) .
Hormone-sensitive_lipase_like :
nocfa-q5yqi7 Nocardia farcinica putative esterase ,
nocfa-q5ys96 Nocardia farcinica putative esterase ,
nocfa-q5yua9 Nocardia farcinica putative lipase ,
nocfa-q5yub8 Nocardia farcinica putative esterase ,
nocfa-q5yun2 Nocardia farcinica putative lipase ,
nocfa-q5yxc9 Nocardia farcinica hypothetical protein ,
nocfa-q5yxx4 Nocardia farcinica putative esterase ,
nocfa-q5z0b7 Nocardia farcinica putative esterase ,
nocfa-q5z3e1 Nocardia farcinica putative esterase .
Lipase_2 :
nocfa-q5ytn3 Nocardia farcinica putative lipase ,
nocfa-q5yxd4 Nocardia farcinica putative lipase .
Monoglyceridelipase_lysophospholip :
nocfa-q5yql3 Nocardia farcinica hypothetical protein ,
nocfa-q5ysa6 Nocardia farcinica (strain IFM 10152) Putative uncharacterized protein ,
nocfa-q5yz80 Nocardia farcinica putative hydrolase .
NLS3-Tex30 :
nocfa-q5ynd9 Nocardia farcinica (strain IFM 10152) Uncharacterized protein .
PAF-Acetylhydrolase :
nocfa-q5yrp3 Nocardia farcinica putative hydrolase ,
nocfa-q5yxg3 Nocardia farcinica hypothetical protein ,
nocfa-q5z1t8 Nocardia farcinica hypothetical protein .
PE-PPE :
nocfa-q5yzq7 Nocardia farcinica Putative uncharacterized protein .
PHA_synth_III_C :
nocfa-q5yqw8 Nocardia farcinica putative hydrolase ,
nocfa-q5yyb5 Nocardia farcinica putative Acyl-CoA synthetase .
Proline_iminopeptidase :
nocfa-q5yz97 Nocardia farcinica putative hydrolase .
RsbQ-like :
nocfa-q5yuk6 Nocardia farcinica putative hydrolase .
S9N_PPCE_Peptidase_S9 :
nocfa-q5ynx0 Nocardia farcinica putative peptidase .
S9N_PREPL_Peptidase_S9 :
nocfa-q5z2d3 Nocardia farcinica putative protease .
Thioesterase :
nocfa-q5yph7 Nocardia farcinica putative non-ribosomal peptide synthetase ,
nocfa-q5yv27 Nocardia farcinica putative non-ribosomal peptide synthetase ,
nocfa-q5yvz9 Nocardia farcinica putative non-ribosomal peptide synthetase ,
nocfa-q5ywp2 Nocardia farcinica putative thioesterase ,
nocfa-q5z0u1 Nocardia farcinica putative non-ribosomal peptide synthetase ,
nocfa-q5z1t3 Nocardia farcinica putative thioesterase ,
nocfa-q5z1x6 Nocardia farcinica putative non-ribosomal peptide synthetase ,
nocfa-q5z1x7 Nocardia farcinica putative non-ribosomal peptide synthetase ,
nocfa-q5z1x8 Nocardia farcinica putative non-ribosomal peptide synthetase ,
nocfa-q5z3g0 Nocardia farcinica putative polyketide synthase .
Tiancimycin-TnmK-Tripeptidase-HIP :
nocfa-q5yn81 Nocardia farcinica putative hydrolase ,
nocfa-q5yz86 Nocardia farcinica putative hydrolase ,
nocfa-q5z339 Nocardia farcinica putative hydrolase .
UCP037442 :
nocfa-q5ynw9 Nocardia farcinica putative hydrolase .
Xaa-Pro-like_dom :
nocfa-q5yx25 Nocardia farcinica putative hydrolase ,
nocfa-q5yza2 Nocardia farcinica putative hydrolase ,
nocfa-q5z200 Nocardia farcinica putative hydrolase Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can
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(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Nocardia farcinica IFM 10152:
N ,
E .
Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: nocfa-q5ysq0 Colored MSA for PE-PPE (raw)
MSRRITAAACAAVTIFWLGPLGFAAPTAVAEPDCRPLVVGVGGNGERAAQ
AAGAHTMMDTHLDQAAAQGARVESLDYTSSVWPTGPYTKDQSVAEGEQAL
AARIGAYRQECPGGHVKVIGHSLGAEIAGNQAHLADEVVVYGDPRRPGGI
YDAIPGIYPGTSNPDHRPAAPNVTSVCHEYDFVCDSPAPWSDPVRFGLGV
QGFLTGWHGYAPGEGQDLGPGDHFVEMPSPNPNIPQNTPTGLPPIEEPLP
LPTWEPGPLPSIQDVNPIIDAFTPEPYTPTPIRDYVPEWVEPALPPEVLD
HVPGPIESYLPVLPPLPPLPDLGVRFP
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M S R R I T A A A C A A V T I F W L G P L G F A A P T A V A E P D C R P L V V G V G G N G E R A A Q A A G A H T M M D T H L D Q A A A Q G A R V E S L D Y T S S V W P T G P Y T K D Q S V A E G E Q A L A A R I G A Y R Q E C P G G H V K V I G H S L G A E I A G N Q A H L A D E V V V Y G D P R R P G G I Y D A I P G I Y P G T S N P D H R P A A P N V T S V C H E Y D F V C D S P A P W S D P V R F G L G V Q G F L T G W H G Y A P G E G Q D L G P G D H F V E M P S P N P N I P Q N T P T G L P P I E E P L P L P T W E P G P L P S I Q D V N P I I D A F T P E P Y T P T P I R D Y V P E W V E P A L P P E V L D H V P G P I E S Y L P V L P P L P P L P D L G V R F P
Reference
Title: The complete genomic sequence of Nocardia farcinica IFM 10152Ishikawa J , Yamashita A , Mikami Y , Hoshino Y , Kurita H , Hotta K , Shiba T , Hattori M Ref: Proc Natl Acad Sci U S A, 101 :14925, 2004 : PubMed Abstract ESTHER: Ishikawa_2004_Proc.Natl.Acad.Sci.U.S.A_101_14925 PubMedSearch: Ishikawa 2004 Proc.Natl.Acad.Sci.U.S.A 101 14925 PubMedID: 15466710 Gene_locus related to this paper: 9arch-q5nw20 ,
nocfa-metx ,
nocfa-q5ymb5 ,
nocfa-q5yml0 ,
nocfa-q5ymz1 ,
nocfa-q5yn12 ,
nocfa-q5yn81 ,
nocfa-q5yna6 ,
nocfa-q5ynd1 ,
nocfa-q5yne7 ,
nocfa-q5ynm0 ,
nocfa-q5ynw9 ,
nocfa-q5ynx0 ,
nocfa-q5yp07 ,
nocfa-q5yp18 ,
nocfa-q5yp33 ,
nocfa-q5yp46 ,
nocfa-q5yp51 ,
nocfa-q5ypg5 ,
nocfa-q5yph7 ,
nocfa-q5ypm0 ,
nocfa-q5ypu9 ,
nocfa-q5ypw3 ,
nocfa-q5yqi7 ,
nocfa-q5yql3 ,
nocfa-q5yqp8 ,
nocfa-q5yqw8 ,
nocfa-q5yqy4 ,
nocfa-q5yr00 ,
nocfa-q5yr19 ,
nocfa-q5yrc7 ,
nocfa-q5yrg2 ,
nocfa-q5yrn9 ,
nocfa-q5yrp2 ,
nocfa-q5yrp3 ,
nocfa-q5yrq8 ,
nocfa-q5yrt6 ,
nocfa-q5yrv3 ,
nocfa-q5yrz4 ,
nocfa-q5ys96 ,
nocfa-q5ys98 ,
nocfa-q5ysa6 ,
nocfa-q5ysq0 ,
nocfa-q5yt17 ,
nocfa-q5ytb0 ,
nocfa-q5ytg1 ,
nocfa-q5ytn3 ,
nocfa-q5ytr2 ,
nocfa-q5ytw9 ,
nocfa-q5ytz8 ,
nocfa-q5yua9 ,
nocfa-q5yub8 ,
nocfa-q5yuk6 ,
nocfa-q5yum4 ,
nocfa-q5yun2 ,
nocfa-q5yun5 ,
nocfa-q5yun7 ,
nocfa-q5yuq2 ,
nocfa-q5yur6 ,
nocfa-q5yus3 ,
nocfa-q5yus4 ,
nocfa-q5yv08 ,
nocfa-q5yv27 ,
nocfa-q5yvb8 ,
nocfa-q5yvi0 ,
nocfa-q5yvk3 ,
nocfa-q5yvr2 ,
nocfa-q5yvw8 ,
nocfa-q5yvz9 ,
nocfa-q5yw34 ,
nocfa-q5yw53 ,
nocfa-q5ywe0 ,
nocfa-q5ywh1 ,
nocfa-q5ywp2 ,
nocfa-q5ywt3 ,
nocfa-q5yx25 ,
nocfa-q5yx42 ,
nocfa-q5yx67 ,
nocfa-q5yxc9 ,
nocfa-q5yxd4 ,
nocfa-q5yxg3 ,
nocfa-q5yxx4 ,
nocfa-q5yy59 ,
nocfa-q5yyb5 ,
nocfa-q5yz80 ,
nocfa-q5yz86 ,
nocfa-q5yz89 ,
nocfa-q5yz97 ,
nocfa-q5yza2 ,
nocfa-q5yzd7 ,
nocfa-q5yzg2 ,
nocfa-q5yzh3 ,
nocfa-q5yzi0 ,
nocfa-q5yzq7 ,
nocfa-q5yzu6 ,
nocfa-q5z0b7 ,
nocfa-q5z0l3 ,
nocfa-q5z0s0 ,
nocfa-q5z0u1 ,
nocfa-q5z1b6 ,
nocfa-q5z1d9 ,
nocfa-q5z1g6 ,
nocfa-q5z1t3 ,
nocfa-q5z1t8 ,
nocfa-q5z1x5 ,
nocfa-q5z1x6 ,
nocfa-q5z1x7 ,
nocfa-q5z1x8 ,
nocfa-q5z2c2 ,
nocfa-q5z2d3 ,
nocfa-q5z2d5 ,
nocfa-q5z2e7 ,
nocfa-q5z2m6 ,
nocfa-q5z2s1 ,
nocfa-q5z2x4 ,
nocfa-q5z2x8 ,
nocfa-q5z2z7 ,
nocfa-q5z3c1 ,
nocfa-q5z3e1 ,
nocfa-q5z3g0 ,
nocfa-q5z3g3 ,
nocfa-q5z3g5 ,
nocfa-q5z3g6 ,
nocfa-q5z3g7 ,
nocfa-q5z3g8 ,
nocfa-q5z3q1 ,
nocfa-q5z3z4 ,
nocfa-q5z200 ,
nocfa-q5z339 ,
nocfa-q5ynw5 ,
nocfa-q5ynd9 ,
nocfa-q5yp20 Abstract
We determined the genomic sequence of Nocardia farcinica IFM 10152, a clinical isolate, and revealed the molecular basis of its versatility. The genome consists of a single circular chromosome of 6,021,225 bp with an average G+C content of 70.8% and two plasmids of 184,027 (pNF1) and 87,093 (pNF2) bp with average G+C contents of 67.2% and 68.4%, respectively. The chromosome encoded 5,674 putative protein-coding sequences, including many candidate genes for virulence and multidrug resistance as well as secondary metabolism. Analyses of paralogous protein families suggest that gene duplications have resulted in a bacterium that can survive not only in soil environments but also in animal tissues, resulting in disease.
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