Gene_locus Report for: oikdi-e4xm43 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, e4xm43 reference scaffold_60 e4yb10 allelic scaffoldA_95
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Tunicata: N E > Appendicularia: N E > Oikopleuridae: N E > Oikopleura: N E > Oikopleura dioica: N E ABHD18 :
oikdi-e4ykb2 Oikopleura dioica (Tunicate). Whole genome shotgun assembly, allelic scaffold set, scaffold scaffoldA_423 .
ACHE :
oikdi-ACHE Oikopleura dioica (Tunicate) acetylcholinesterase E4XEG5 scaffold_27 e4y4h2 allelic scaffoldA_4 .
Acidic_Lipase :
oikdi-e4y8s7 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, allelic scaffold set, scaffold scaffoldA_54 ,
oikdi-e4yvr0 Oikopleura dioica (Tunicate) Lipase .
Carb_B_Chordata :
oikdi-cholike.1 Oikopleura dioica clone BACOIKO003 5xk14, two esterase like sequences e4y7i7 allelic scaffoldA_35 ,
oikdi-cholike.2 Oikopleura dioica Oikopleura dioica clone BACOIKO003 5xk14, two esterase like sequences e4y7i7 allelic scaffoldA_35 ,
oikdi-e4wug8 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold_2 allelic scaffold set, scaffold scaffoldA_3 ,
oikdi-e4x0y9 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_6 ,
oikdi-e4x1t6 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_7 ,
oikdi-e4x2c7.1 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, e4x2c7 reference scaffold_8 e4y607 allelic scaffoldA_16 allelic scaffoldA_1156 ,
oikdi-e4x2c7.2 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, e4x2c7 reference scaffold_8 e4y607 allelic scaffoldA_16 allelic scaffoldA_1156 ,
oikdi-e4x4v7 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold_11 allelic scaffoldA_747 ,
oikdi-e4x6c7 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold_12 allelic scaffoldA_403 allelic scaffoldA_513 ,
oikdi-e4xp62 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold_75 allelic scaffoldA_3183 ,
oikdi-e4xqm4 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_92 Only C-term homologous to carboxylesterase ,
oikdi-e4xv59 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_187 ,
oikdi-e4xwt6 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold_241 allelic scaffoldA_875 ,
oikdi-e4y5n1 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, allelic scaffoldA_14 allelic scaffoldA_2099 (E4ZOS6 much shorter) ,
oikdi-e4yvu0 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, allelic scaffold set, scaffold scaffoldA_1302 .
Cholesterol_esterase :
oikdi-e4yp15 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, allelic scaffoldA_646 reference scaffold_150 .
Cholinesterase-like :
oikdi-e4x5i7 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold_11, allelic scaffoldA_208 ,
oikdi-e4x5s6 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold_12 allelic scaffoldA_181 allelic scaffoldA_3972 ,
oikdi-e4x6i0 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_13 ,
oikdi-e4xeg3 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold_27 allelic scaffoldA_4 fragment concatened to Peptidase M14 ,
oikdi-e4xk51 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_49 ,
oikdi-e4xl53 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_53 ,
oikdi-e4xm24 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold_59 allelic scaffoldA_4172 ,
oikdi-e4xtm1 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_144 ,
oikdi-e4xug7 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_168 ,
oikdi-e4xxh8 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold_266 allelic scaffoldA_1415 .
CIB-CCG1-interacting-factor-B :
oikdi-e4xa91 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_17 .
DPP4N_Peptidase_S9 :
oikdi-e4xiw0 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_42 ,
oikdi-e4xn79 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_68 ,
oikdi-e4xw55 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_218 ,
oikdi-e4ya76 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, allelic scaffold set, scaffold scaffoldA_81 ,
oikdi-e4ydw0 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, allelic scaffold set, scaffold scaffoldA_167 ,
oikdi-e4yp69 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, allelic scaffold set, scaffold scaffoldA_658 ,
oikdi-e4yst1 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, allelic scaffold set, scaffold scaffoldA_976 .
Extracel-MCL-phaZ :
oikdi-e4ws23 Oikopleura dioica (Tunicate). Esterase .
Kynurenine-formamidase :
oikdi-e4wt97 Oikopleura dioica (Tunicate). N-formylkynurenine formamidase .
Monoglyceridelipase_lysophospholip :
oikdi-e4ww04 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_3 ,
oikdi-e4wxm9 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_4 ,
oikdi-e4xe86 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_27 ,
oikdi-e4y7j8 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, allelic scaffold set, scaffold scaffoldA_35 .
Ndr_family :
oikdi-e4x630 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_12 .
Pancreatic_lipase :
9uroc-q676a9 Oikopleura dioica triacylglycerol lipase-like protein .
PPase_methylesterase_euk :
oikdi-e4x7y6 Oikopleura dioica (Tunicate) Protein phosphatase methylesterase 1 .
Prolylcarboxypeptidase :
oikdi-e4xpy1 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_84 ,
oikdi-e4yi65 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, allelic scaffold set, scaffold scaffoldA_320 .
Valacyclovir-hydrolase :
oikdi-e4xgg8 Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_34 Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: oikdi-e4xm43 Colored MSA for Carb_B_Chordata (raw)
MREFLSIALLSLCCFADDRFSNNWGEKLLISSDKRSVSSDDFLFLNKVEV
DLDEGKLIGYQVTGKNFEVFKQVPYAKPPTGPRRFKKPEPIVNFENRRHN
SVAVGDNIKSCPGHGYGKDDLFAALEAGIISEDCLTVDIYRPVKHYETSL
PIFVWIHGGGLTTGTSAYYHFSRLAREDIIIAVVQYRLGVHGFMSSYSVN
GPSETPGNFGLLDQQAAIEFVHRNAKNLGGDPAKITIGGESAGGWSVGWH
MLSTKSTNMIRTAISQSGMAAFDMSPQDSEHGNLAIRHLCEKTNTQDISR
VLDCSVGVENIVDQFRTFSTNDTLKLQIADRDCRREYENYPDWAPVSYDG
EFFKMNAKEEFVGGHIVDDVIYVIGTNSFEASLIWKWLIASDGVQTYEDR
FKIFEGLEGYKEGTKMSEKRLRYVPVENRQNIFENYFRILRDEPWLNCAD
IENCSALEYQLLAAKIWGDMAFVLPAFEQALMYSDKSAFVAVYYLNIDML
YDLLGQMSFPINGSGHAEDIMFMLDVPAMELNLNGETKTMWEILHSPSGA
TYPPKEYMYHMADVFVNHWSSIIKHGHPASPWNQFERGYMHFVEWTNNQT
HAIENVHSSLPPTIKFMIDTYGDNNSSSARIIFSSFITTLLSLFLFHIF
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M R E F L S I A L L S L C C F A D D R F S N N W G E K L L I S S D K R S V S S D D F L F L N K V E V D L D E G K L I G Y Q V T G K N F E V F K Q V P Y A K P P T G P R R F K K P E P I V N F E N R R H N S V A V G D N I K S C P G H G Y G K D D L F A A L E A G I I S E D C L T V D I Y R P V K H Y E T S L P I F V W I H G G G L T T G T S A Y Y H F S R L A R E D I I I A V V Q Y R L G V H G F M S S Y S V N G P S E T P G N F G L L D Q Q A A I E F V H R N A K N L G G D P A K I T I G G E S A G G W S V G W H M L S T K S T N M I R T A I S Q S G M A A F D M S P Q D S E H G N L A I R H L C E K T N T Q D I S R V L D C S V G V E N I V D Q F R T F S T N D T L K L Q I A D R D C R R E Y E N Y P D W A P V S Y D G E F F K M N A K E E F V G G H I V D D V I Y V I G T N S F E A S L I W K W L I A S D G V Q T Y E D R F K I F E G L E G Y K E G T K M S E K R L R Y V P V E N R Q N I F E N Y F R I L R D E P W L N C A D I E N C S A L E Y Q L L A A K I W G D M A F V L P A F E Q A L M Y S D K S A F V A V Y Y L N I D M L Y D L L G Q M S F P I N G S G H A E D I M F M L D V P A M E L N L N G E T K T M W E I L H S P S G A T Y P P K E Y M Y H M A D V F V N H W S S I I K H G H P A S P W N Q F E R G Y M H F V E W T N N Q T H A I E N V H S S L P P T I K F M I D T Y G D N N S S S A R I I F S S F I T T L L S L F L F H I F
Reference
Title: Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicateDenoeud F , Henriet S , Mungpakdee S , Aury JM , Da Silva C , Brinkmann H , Mikhaleva J , Olsen LC , Jubin C and Chourrout D <46 more author(s)> Denoeud F , Henriet S , Mungpakdee S , Aury JM , Da Silva C , Brinkmann H , Mikhaleva J , Olsen LC , Jubin C , Canestro C , Bouquet JM , Danks G , Poulain J , Campsteijn C , Adamski M , Cross I , Yadetie F , Muffato M , Louis A , Butcher S , Tsagkogeorga G , Konrad A , Singh S , Jensen MF , Huynh Cong E , Eikeseth-Otteraa H , Noel B , Anthouard V , Porcel BM , Kachouri-Lafond R , Nishino A , Ugolini M , Chourrout P , Nishida H , Aasland R , Huzurbazar S , Westhof E , Delsuc F , Lehrach H , Reinhardt R , Weissenbach J , Roy SW , Artiguenave F , Postlethwait JH , Manak JR , Thompson EM , Jaillon O , Du Pasquier L , Boudinot P , Liberles DA , Volff JN , Philippe H , Lenhard B , Roest Crollius H , Wincker P , Chourrout D (- 46) Ref: Science, 330 :1381, 2010 : PubMed Abstract ESTHER: Denoeud_2010_Science_330_1381 PubMedSearch: Denoeud 2010 Science 330 1381 PubMedID: 21097902 Gene_locus related to this paper: oikdi-ACHE ,
oikdi-cholike.1 ,
oikdi-cholike.2 ,
oikdi-e4wug8 ,
oikdi-e4ww04 ,
oikdi-e4wxm9 ,
oikdi-e4x0y9 ,
oikdi-e4x1t6 ,
oikdi-e4x2c7.1 ,
oikdi-e4x2c7.2 ,
oikdi-e4x4v7 ,
oikdi-e4x5i7 ,
oikdi-e4x5s6 ,
oikdi-e4x6c7 ,
oikdi-e4x6i0 ,
oikdi-e4x7y6 ,
oikdi-e4xa91 ,
oikdi-e4xe86 ,
oikdi-e4xeg3 ,
oikdi-e4xgg8 ,
oikdi-e4xiw0 ,
oikdi-e4xk51 ,
oikdi-e4xl53 ,
oikdi-e4xm24 ,
oikdi-e4xm43 ,
oikdi-e4xn79 ,
oikdi-e4xp62 ,
oikdi-e4xpy1 ,
oikdi-e4xqm4 ,
oikdi-e4xtm1 ,
oikdi-e4xug7 ,
oikdi-e4xv59 ,
oikdi-e4xw55 ,
oikdi-e4xwt6 ,
oikdi-e4xxh8 ,
oikdi-e4y5n1 ,
oikdi-e4y7j8 ,
oikdi-e4y8s7 ,
oikdi-e4ya76 ,
oikdi-e4ydw0 ,
oikdi-e4yi65 ,
oikdi-e4yp15 ,
oikdi-e4yp69 ,
oikdi-e4yst1 ,
oikdi-e4yvr0 ,
oikdi-e4yvu0 ,
oikdi-e4x630 ,
oikdi-e4ykb2 ,
oikdi-e4wt97 ,
oikdi-e4ws23 Abstract
Genomes of animals as different as sponges and humans show conservation of global architecture. Here we show that multiple genomic features including transposon diversity, developmental gene repertoire, physical gene order, and intron-exon organization are shattered in the tunicate Oikopleura, belonging to the sister group of vertebrates and retaining chordate morphology. Ancestral architecture of animal genomes can be deeply modified and may therefore be largely nonadaptive. This rapidly evolving animal lineage thus offers unique perspectives on the level of genome plasticity. It also illuminates issues as fundamental as the mechanisms of intron gain.
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