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Gene_locus Report for: oikdi-e4xpy1

Oikopleura dioica (Tunicate) Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_84

Relationship
Family|Prolylcarboxypeptidase
Block| X
Position in NCBI Life Tree|Oikopleura dioica
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Tunicata: N E > Appendicularia: N E > Oikopleuridae: N E > Oikopleura: N E > Oikopleura dioica: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : FN653098, FN654826
2 UniProt : E4XPY1, E4YMJ5
2 UniProt : E4XPY1, E4YMJ5
2 Interpro : E4XPY1, E4YMJ5
2 Pfam : E4XPY1, E4YMJ5
2 PIRSF : E4XPY1, E4YMJ5
2 SUPERFAM : E4XPY1, E4YMJ5
Sequence
Graphical view for this peptide sequence: oikdi-e4xpy1
Colored MSA for Prolylcarboxypeptidase (raw)
MLLLSLLSVSVAAKLKFETGIKYETKWIDQRVDNFNYYLDKTYKMRYLVN
TDFVKDEKTAPIFFYTGNEGPIDSFAANTGFMNEFAEEENAFIVYAEHRY
YGQSLPYGNSSFTPENMAYLSVENALADFAQLIVELKKTYKGPLICFGGS
YGGLLSMYMRMTYPNLVNGALAASSPVYWISAMGDSHGFWVKTTEDFSTA
LDKCEDTIRAGFAALDKMKNDKDWAGITKTMRTCQNITEDNYMHMLGWAR
NAMATMAMMDYPYPTNFEAALPGNPVKESCVRAVAETGADSIREAAGLVY
NGTDPSKYKQCFDIMEEYVYCSDPTGCGTGPQALAWDYQCCTQQVLPGGT
DGKTDMFPLIKFDVDDRAAYCNKTWGVVPDRDWLRIKYWADNLEATSNTI
FSNGDLDPWGPGGVTHDLRHDLPAPLVHGGAHHYDLRGSNSGDTQDVLNV
RQFHRDTIRDWMAQFYAEQEL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MLLLSLLSVSVAAKLKFETGIKYETKWIDQRVDNFNYYLDKTYKMRYLVN
TDFVKDEKTAPIFFYTGNEGPIDSFAANTGFMNEFAEEENAFIVYAEHRY
YGQSLPYGNSSFTPENMAYLSVENALADFAQLIVELKKTYKGPLICFGGS
YGGLLSMYMRMTYPNLVNGALAASSPVYWISAMGDSHGFWVKTTEDFSTA
LDKCEDTIRAGFAALDKMKNDKDWAGITKTMRTCQNITEDNYMHMLGWAR
NAMATMAMMDYPYPTNFEAALPGNPVKESCVRAVAETGADSIREAAGLVY
NGTDPSKYKQCFDIMEEYVYCSDPTGCGTGPQALAWDYQCCTQQVLPGGT
DGKTDMFPLIKFDVDDRAAYCNKTWGVVPDRDWLRIKYWADNLEATSNTI
FSNGDLDPWGPGGVTHDLRHDLPAPLVHGGAHHYDLRGSNSGDTQDVLNV
RQFHRDTIRDWMAQFYAEQEL


Reference
    Title: Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate
    Denoeud F, Henriet S, Mungpakdee S, Aury JM, Da Silva C, Brinkmann H, Mikhaleva J, Olsen LC, Jubin C and Chourrout D <46 more author(s)>
    Ref: Science, 330:1381, 2010 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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