oryla-d2x2i5

 
Oryzias latipes (Medaka fish) (Japanese ricefish) Neuroligin 3b

Relationship
Family Neuroligin
Block C
Oryzias latipes position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Actinopterygii: N E > Actinopteri: N E > Neopterygii: N E > Teleostei: N E > Osteoglossocephalai: N E > Clupeocephala: N E > Euteleosteomorpha: N E > Neoteleostei: N E > Eurypterygia: N E > Ctenosquamata: N E > Acanthomorphata: N E > Euacanthomorphacea: N E > Percomorphaceae: N E > Ovalentaria: N E > Atherinomorphae: N E > Beloniformes: N E > Adrianichthyoidei: N E > Adrianichthyidae: N E > Oryziinae: N E > Oryzias: N E > Oryzias latipes: N E

Molecular evidence
Database
No mutation
No structure
No kinetic



1 Genbank : GQ489216
1 UniProt : D2X2I5
1 UniProtTrembl : D2X2I5
1 Interpro : D2X2I5
1 Prodom : D2X2I5
1 Pfam : D2X2I5
1 PIRSF : D2X2I5
1 SUPERFAM : D2X2I5
1 QuickSwissBlast : D2X2I5
 
Sequence
Graphical view for this peptide sequence: oryla-d2x2i5
Colored MSA for Neuroligin (raw)
MWLATFRGHLLPTHLLHQQGTTTLAHCALLWWISCSCWSLTKATSQKFYP
TVTTQFGKLRGLRVPVPSEVLRPVDQYLGVPYAAPPVGEKRFMPPEQPSS
WSGVKNATHFMPVCPQNIHSTVPEIMMPIWFTYNLDTVATYIQDQSEDCL
YLNIYAPTDDGSQHRKKGASFSHAEIHISEDIRDSEARPVMVYIHGGSYM
EGTGNMMDGSILASYGNVIVVTLNYRIGILGFLSTGDQAAKGNYGLLDQI
QALRWISKNIGYFGGDPGRITVFGSGIGASCVSLLTLSHHSEGLFHRAII
QSGSALSSWAVNYQPVKYTRMLAERVGCNVLDTVDMVSCLQKKSAKELVE
QDIQAARYRVAFGPVIDGDVIPDDPEILMEQGEFLNYDIMLGVNQGEGLR
FVENAMDLEDGVSGSDFDFAVSDFVDSLYGYPEGKDTLRETIKFMYTDWA
DKDNPETRRKTLVALFTDHQWVEPSVVTADLHARYGSPTYFYAFYHHCQS
LMKPVWSDSAHGDEVPYVFGIPMVGPTDLFPCNFSRNDIMLSAVVMTYWT
NFAKSGDPNKPVPQDTKFIHTKANRFEEVAWSKYNPYDQMYLHIGLKPRI
RDHYRATKVAFWKHLVPHLYNLHDMFHYSSTTTKVTPLDATQSNGKRSSS
TGRTPISTANSHGEGGGEMGPLIMPNPRDYSTELSVTIAVGASLLFLNVL
AFAALYYRKDKRSRQETSQQPSPQRESKGNSAGHTNTVDETLSSQQRNPC
EALHNPLHVSPSYSISQRRSPDDIPLMTPNNITMIPNSLMGLSNMSPYST
FPAGYSSAGLPSTHSTTRV
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MWLATFRGHLLPTHLLHQQGTTTLAHCALLWWISCSCWSLTKATSQKFYP
TVTTQFGKLRGLRVPVPSEVLRPVDQYLGVPYAAPPVGEKRFMPPEQPSS
WSGVKNATHFMPVCPQNIHSTVPEIMMPIWFTYNLDTVATYIQDQSEDCL
YLNIYAPTDDGSQHRKKGASFSHAEIHISEDIRDSEARPVMVYIHGGSYM
EGTGNMMDGSILASYGNVIVVTLNYRIGILGFLSTGDQAAKGNYGLLDQI
QALRWISKNIGYFGGDPGRITVFGSGIGASCVSLLTLSHHSEGLFHRAII
QSGSALSSWAVNYQPVKYTRMLAERVGCNVLDTVDMVSCLQKKSAKELVE
QDIQAARYRVAFGPVIDGDVIPDDPEILMEQGEFLNYDIMLGVNQGEGLR
FVENAMDLEDGVSGSDFDFAVSDFVDSLYGYPEGKDTLRETIKFMYTDWA
DKDNPETRRKTLVALFTDHQWVEPSVVTADLHARYGSPTYFYAFYHHCQS
LMKPVWSDSAHGDEVPYVFGIPMVGPTDLFPCNFSRNDIMLSAVVMTYWT
NFAKSGDPNKPVPQDTKFIHTKANRFEEVAWSKYNPYDQMYLHIGLKPRI
RDHYRATKVAFWKHLVPHLYNLHDMFHYSSTTTKVTPLDATQSNGKRSSS
TGRTPISTANSHGEGGGEMGPLIMPNPRDYSTELSVTIAVGASLLFLNVL
AFAALYYRKDKRSRQETSQQPSPQRESKGNSAGHTNTVDETLSSQQRNPC
EALHNPLHVSPSYSISQRRSPDDIPLMTPNNITMIPNSLMGLSNMSPYST
FPAGYSSAGLPSTHSTTRV

no DNA




Reference
    Title: Characterization of the neuroligin gene family expression and evolution in zebrafish
    Rissone A, Sangiorgio L, Monopoli M, Beltrame M, Zucchi I, Bussolino F, Arese M, Cotelli F
    Ref: Developmental Dynamics, 239:688, 2010 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer