Gene_Locus Report

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Gene_locus Report for: oryla-h2lxr5

Oryzias latipes (Japanese rice fish) (Japanese killifish). Abhydrolase domain containing 8a

Relationship
Family|ABHD8
Block| X
Position in NCBI Life Tree|Oryzias latipes
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Actinopterygii: N E > Actinopteri: N E > Neopterygii: N E > Teleostei: N E > Osteoglossocephalai: N E > Clupeocephala: N E > Euteleosteomorpha: N E > Neoteleostei: N E > Eurypterygia: N E > Ctenosquamata: N E > Acanthomorphata: N E > Euacanthomorphacea: N E > Percomorphaceae: N E > Ovalentaria: N E > Atherinomorphae: N E > Beloniformes: N E > Adrianichthyoidei: N E > Adrianichthyidae: N E > Oryziinae: N E > Oryzias: N E > Oryzias latipes: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 UniProt : H2LXR5, A0A3B3IP52
2 UniProt : H2LXR5, A0A3B3IP52
2 Interpro : H2LXR5, A0A3B3IP52
2 Pfam : H2LXR5, A0A3B3IP52
2 PIRSF : H2LXR5, A0A3B3IP52
2 SUPERFAM : H2LXR5, A0A3B3IP52
Sequence
Graphical view for this peptide sequence: oryla-h2lxr5
Colored MSA for ABHD8 (raw)
MLTSITDGILCCLTGKTDNLVLPLESSKPSDGFEFVEVKPGRVLRVRHIV
PERQPLEKQAPGKQRTDVDYSDVGTSVHCKRKISVYRDGQLVIENLGDVL
HSEILQCQDGDLEPCSTVEVELADYREIASSPDPNPVPLPGPVHTGEQKP
APPPRRRRRKPKRTVLIDSKRVISSCKGTHSDVALFFVHGVGGSLDIWSS
QLDFFSRLGYEVIAPDLAGHGASTAPQIAAAYTFYALAEDLRAIFKRYAR
KRNILIGHSYGVSFCTFLAHEYPDLVHKVVMINGGGPTALEPSLCSIFQL
PSCVLHCLSPCLAWSFLKAGFARQGAKEKQLLKQGNAFNVSPFVLRAMMS
GQYWPEGDEVYHAELTTPILLVHGMCDKFVPVDEDQRMAEILLFAFLKVI
EEGSHMVMMECPDTVNTLLHEFFLWEPDMSKKSSCKADVEKTVSACETLT
TLKHHKSVDK
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MLTSITDGILCCLTGKTDNLVLPLESSKPSDGFEFVEVKPGRVLRVRHIV
PERQPLEKQAPGKQRTDVDYSDVGTSVHCKRKISVYRDGQLVIENLGDVL
HSEILQCQDGDLEPCSTVEVELADYREIASSPDPNPVPLPGPVHTGEQKP
APPPRRRRRKPKRTVLIDSKRVISSCKGTHSDVALFFVHGVGGSLDIWSS
QLDFFSRLGYEVIAPDLAGHGASTAPQIAAAYTFYALAEDLRAIFKRYAR
KRNILIGHSYGVSFCTFLAHEYPDLVHKVVMINGGGPTALEPSLCSIFQL
PSCVLHCLSPCLAWSFLKAGFARQGAKEKQLLKQGNAFNVSPFVLRAMMS
GQYWPEGDEVYHAELTTPILLVHGMCDKFVPVDEDQRMAEILLFAFLKVI
EEGSHMVMMECPDTVNTLLHEFFLWEPDMSKKSSCKADVEKTVSACETLT
TLKHHKSVDK


Reference
    Title: The medaka draft genome and insights into vertebrate genome evolution
    Kasahara M, Naruse K, Sasaki S, Nakatani Y, Qu W, Ahsan B, Yamada T, Nagayasu Y, Doi K and Kohara Y <28 more author(s)>
    Ref: Nature, 447:714, 2007 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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