Gene_Locus Report

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Gene_locus Report for: orysa-q2qnj4

Oryza sativa (subsp. japonica subsp. indica (Rice) f. spontanea, Asian wild rice); Oryza barthii; Oryza glumipatula; Oryza nivara (Indian wild rice); Oryza rufipogon (Brownbeard rice); Oryza meridionalis; Oryza punctata; (Red rice) hypothetical protein

Comment
Only c-term PfamA FSH1 389 623 Other strains: Oryza sativa (subsp. japonica subsp. indica (Rice) f. spontanea, Asian wild rice); Oryza barthii; Oryza glumipatula; Oryza nivara (Indian wild rice); Oryza rufipogon (Brownbeard rice); Oryza meridionalis; Oryza punctata; (Red rice)


Relationship
Family|FSH1
Block| X
Position in NCBI Life Tree|Oryza sativa
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
Sequence
Graphical view for this peptide sequence: orysa-q2qnj4
Colored MSA for FSH1 (raw)
LKKLKILCLHGFRQNASNFKGRTSALAKKLKHIADLVFIDAPHELSFVYK
PNPDHCSGRSSLPSGTPKRKYAWLVAPNSIFYAEHDWKIADAPFDPLQYQ
QQTDGFEESYAYLEHAISQMGNIDGILGFSQGAAMAALFCRQQQKTCGSL
KFRFGIFCSGYPAPIISDFDGEPIKLPSLHCFGNSEDHDRQIANRASTEL
ANRFDKSCRSVIEHDMGHIIPTRPPFIDKIKEFLSNFI
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

LKKLKILCLHGFRQNASNFKGRTSALAKKLKHIADLVFIDAPHELSFVYK
PNPDHCSGRSSLPSGTPKRKYAWLVAPNSIFYAEHDWKIADAPFDPLQYQ
QQTDGFEESYAYLEHAISQMGNIDGILGFSQGAAMAALFCRQQQKTCGSL
KFRFGIFCSGYPAPIISDFDGEPIKLPSLHCFGNSEDHDRQIANRASTEL
ANRFDKSCRSVIEHDMGHIIPTRPPFIDKIKEFLSNFI


References
1 more
    Title: Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
    Itoh T, Tanaka T, Barrero RA, Yamasaki C, Fujii Y, Hilton PB, Antonio BA, Aono H, Apweiler R and Sasaki T <85 more author(s)>
    Ref: Genome Res, 17:175, 2007 : PubMed

            

    Title: The map-based sequence of the rice genome.
    Matsumo T, Sasaki T
    Ref: Nature, 436:793, 2005 : PubMed

            

    Title: Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
    Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H and Yasunishi A <64 more author(s)>
    Ref: Science, 301:376, 2003 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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