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Gene_locus Report for: orysa-q651a8

Oryza sativa subsp. japonica subsp. indica (Rice) hypothetical protein b1331f11.10-2

Relationship
Family|Lipase_3
Block| L
Position in NCBI Life Tree|Oryza sativa
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : AP006162
3 UniProt : Q651A8, Q651A9, B8BEU2
3 UniProt : Q651A8, Q651A9, B8BEU2
3 Interpro : Q651A8, Q651A9, B8BEU2
3 Pfam : Q651A8, Q651A9, B8BEU2
3 PIRSF : Q651A8, Q651A9, B8BEU2
3 SUPERFAM : Q651A8, Q651A9, B8BEU2
Sequence
Peptide
Graphical view for this peptide sequence: orysa-q651a8
Colored MSA for Lipase_3 (raw) 
MLRKRNVLKFVKDSSILRPGYYIAIDPRTKLVILGIRGTHTVYDLVTDLI
ALSDKKVSPKGFSTHFGTYEAARWYLRHELGLIRKCLEKHKDYKLRLVGH
SLGGASAALLAIMLRKKSKEELGFSPDVISAVGYGTPPCVSREIAQSCAS
YVSTVVLQDDIIPRLSAASLARLRAEILKTDWVSVLEKEDWKHIVDIVTN
AKLVVSSIQDVARKLADYAKIVTVSTSSDAIKDQDRPLSTSEVLSPDSKE
DVFVPEDLFLPGTLYYLKRDIEDINGVEDESYTLWRGDAGENFQRILLSG
NLISDHKCESIYYALRDVLKTLPPQESG
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA
MLRKRNVLKFVKDSSILRPGYYIAIDPRTKLVILGIRGTHTVYDLVTDLI
ALSDKKVSPKGFSTHFGTYEAARWYLRHELGLIRKCLEKHKDYKLRLVGH
SLGGASAALLAIMLRKKSKEELGFSPDVISAVGYGTPPCVSREIAQSCAS
YVSTVVLQDDIIPRLSAASLARLRAEILKTDWVSVLEKEDWKHIVDIVTN
AKLVVSSIQDVARKLADYAKIVTVSTSSDAIKDQDRPLSTSEVLSPDSKE
DVFVPEDLFLPGTLYYLKRDIEDINGVEDESYTLWRGDAGENFQRILLSG
NLISDHKCESIYYALRDVLKTLPPQESG

References
    Title: Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
    Itoh T, Tanaka T, Barrero RA, Yamasaki C, Fujii Y, Hilton PB, Antonio BA, Aono H, Apweiler R and Sasaki T <85 more author(s)>
    Ref: Genome Res, 17:175, 2007 : PubMed

            

    Title: The map-based sequence of the rice genome.
    Matsumo T, Sasaki T
    Ref: Nature, 436:793, 2005 : PubMed

            

    Title: The Genomes of Oryza sativa: a history of duplications
    Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S and Yang H <88 more author(s)>
    Ref: PLoS Biol, 3:e38, 2005 : PubMed

            


Other Papers

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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