Gene_Locus Report

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Gene_locus Report for: orysj-b9gbs4

Oryza sativa subsp. japonica (Rice); Oryza glaberrima (African rice). Os11g0139000 protein

Comment
Other strains: Oryza sativa subsp. japonica (Rice); Oryza glaberrima (African rice)


Relationship
Family|Plant_carboxylesterase
Block| H
Position in NCBI Life Tree|Oryza sativa subsp. japonica
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E > Oryza sativa Japonica Group: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : CM000149, AP008217, FQ378034
3 UniProt : B9GBS4, C7J8P1, G2XMP7
3 UniProt : B9GBS4, C7J8P1, G2XMP7
3 Interpro : B9GBS4, C7J8P1, G2XMP7
3 Pfam : B9GBS4, C7J8P1, G2XMP7
3 PIRSF : B9GBS4, C7J8P1, G2XMP7
3 SUPERFAM : B9GBS4, C7J8P1, G2XMP7
Sequence
Graphical view for this peptide sequence: orysj-b9gbs4
Colored MSA for Plant_carboxylesterase (raw)
MATLPQMAATKERQEAANPTTTTRTLVESVTNWIRVYSDGSVDRLGPPEA
AAFMVLVPPYDDPRDGVTVHDVATDHGVDVRLYLTTTAPARRRPVLVHFH
GGGFCLSQAAWSLCHRFYARLTVDLDVAGIVSVVLPVAPEHRLPAAIDAG
HAALLWLRDVASGGSDTIAHPAVERLCGAADFSRVFLIGDSAGGVLVHNV
AARAGEAGAEALDPIRLAGGVQLHPGFILPEKSPSELENPPTPFMTQETV
DKFVVLALPVGTTSRDHPYTSPAAAVTAAEGAQLPPMLVMVAEEDMLRDA
QVEYGEAMARAGKAVETVVSHGRGIGHVFYLNWFAVESHPVAAARARELV
DAVKSFVDSH
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MATLPQMAATKERQEAANPTTTTRTLVESVTNWIRVYSDGSVDRLGPPEA
AAFMVLVPPYDDPRDGVTVHDVATDHGVDVRLYLTTTAPARRRPVLVHFH
GGGFCLSQAAWSLCHRFYARLTVDLDVAGIVSVVLPVAPEHRLPAAIDAG
HAALLWLRDVASGGSDTIAHPAVERLCGAADFSRVFLIGDSAGGVLVHNV
AARAGEAGAEALDPIRLAGGVQLHPGFILPEKSPSELENPPTPFMTQETV
DKFVVLALPVGTTSRDHPYTSPAAAVTAAEGAQLPPMLVMVAEEDMLRDA
QVEYGEAMARAGKAVETVVSHGRGIGHVFYLNWFAVESHPVAAARARELV
DAVKSFVDSH


References
1 more
    Title: Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
    Itoh T, Tanaka T, Barrero RA, Yamasaki C, Fujii Y, Hilton PB, Antonio BA, Aono H, Apweiler R and Sasaki T <85 more author(s)>
    Ref: Genome Res, 17:175, 2007 : PubMed

            

    Title: The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information
    Ohyanagi H, Tanaka T, Sakai H, Shigemoto Y, Yamaguchi K, Habara T, Fujii Y, Antonio BA, Nagamura Y and Sasaki T <4 more author(s)>
    Ref: Nucleic Acids Research, 34:D741, 2006 : PubMed

            

    Title: The Genomes of Oryza sativa: a history of duplications
    Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S and Yang H <88 more author(s)>
    Ref: PLoS Biol, 3:e38, 2005 : PubMed

            


Other Papers


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Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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