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Gene_locus Report for: orysj-q10ss2

Oryza sativa subsp. japonica (Rice)subsp. indica cDNA clone:J023105E01

Relationship
Family|Duf_726
Block| X
Position in NCBI Life Tree|Oryza sativa
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 2 more: DP000009, AP008209, AK100572
3 UniProt : Q10SS2, A2XBP3, Q10SS1
3 UniProt : Q10SS2, A2XBP3, Q10SS1
3 Interpro : Q10SS2, A2XBP3, Q10SS1
3 Prodom : Q10SS2, A2XBP3, Q10SS1
3 Pfam : Q10SS2, A2XBP3, Q10SS1
3 PIRSF : Q10SS2, A2XBP3, Q10SS1
3 SUPERFAM : Q10SS2, A2XBP3, Q10SS1
Sequence
Graphical view for this peptide sequence: orysj-q10ss2
Colored MSA for Duf_726 (raw)
STRFRKGYDARHRVALRLLSTWLDVKWIKMEAIEVMVACSAMAAAKEQEQ
SQESASPKSKWEKWKRGGIIGAAALTGGALLAITGGLAAPAIAAGFGALA
PTLGTLVPVIGASGFAAMATAAGSVAGSVAVAASFGAAGAGLTGSKMARR
IGSVKEFEFKPIGENHNQGRLAVGILISGFAFDEDDFCRPWEGWQDNLER
YILQWESKHIIAVSTAIQDWLTSRLAMELMKQGAMRTVLSGLLAAFAWPA
TLLAATDFIDSKWSVAIDRSDKAGKMLAEVLLKGLQGNRPVTLIGFSLGA
RVIFKCLQELALSSDNEGLVERVVLLGAPVSVKGERWEAARKMVAGRFVN
VYSTDDWILGVTFRASLLTQGLAGIQAIDVPGVENVDVTELVDGHSSYLS
AAQQILEHLELNTYYPVFVPLSAANEETDGTVAQ
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

STRFRKGYDARHRVALRLLSTWLDVKWIKMEAIEVMVACSAMAAAKEQEQ
SQESASPKSKWEKWKRGGIIGAAALTGGALLAITGGLAAPAIAAGFGALA
PTLGTLVPVIGASGFAAMATAAGSVAGSVAVAASFGAAGAGLTGSKMARR
IGSVKEFEFKPIGENHNQGRLAVGILISGFAFDEDDFCRPWEGWQDNLER
YILQWESKHIIAVSTAIQDWLTSRLAMELMKQGAMRTVLSGLLAAFAWPA
TLLAATDFIDSKWSVAIDRSDKAGKMLAEVLLKGLQGNRPVTLIGFSLGA
RVIFKCLQELALSSDNEGLVERVVLLGAPVSVKGERWEAARKMVAGRFVN
VYSTDDWILGVTFRASLLTQGLAGIQAIDVPGVENVDVTELVDGHSSYLS
AAQQILEHLELNTYYPVFVPLSAANEETDGTVAQ


References
4 more
    Title: Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species
    Buell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J and Jackson S <62 more author(s)>
    Ref: Genome Res, 15:1284, 2005 : PubMed

            

    Title: The Genomes of Oryza sativa: a history of duplications
    Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S and Yang H <88 more author(s)>
    Ref: PLoS Biol, 3:e38, 2005 : PubMed

            

    Title: Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
    Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H and Yasunishi A <64 more author(s)>
    Ref: Science, 301:376, 2003 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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