Gene_Locus Report

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Gene_locus Report for: phatr-b7s4a4

Phaeodactylum tricornutum CCAP 1055/1 Predicted protein

Relationship
Family|Duf_1350
Block| X
Position in NCBI Life Tree|Phaeodactylum tricornutum CCAP 1055/1
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Stramenopiles: N E > Bacillariophyta: N E > Bacillariophyceae: N E > Bacillariophycidae: N E > Naviculales: N E > Phaeodactylaceae: N E > Phaeodactylum: N E > Phaeodactylum tricornutum: N E > Phaeodactylum tricornutum CCAP 1055/1: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : DS999284
1 UniProt : B7S4A4
1 UniProt : B7S4A4
1 Interpro : B7S4A4
1 Pfam : B7S4A4
1 PIRSF : B7S4A4
1 SUPERFAM : B7S4A4
Sequence
Graphical view for this peptide sequence: phatr-b7s4a4
Colored MSA for Duf_1350 (raw)
MYLGDSGQCQGWSPSRNLPARTRRIARRPWCFSARNPPLPLGNLASSRRD
VGNEQFYNGDDDNTDFYNERASRKSRLDDSSPYWSNDADNEFHDKAQSSS
GGFYNVHFDNRNGDAAAAPEPLAWERCATDAGVVQVLLPPASVALPTAVL
HFVGGTLFGSAPSVWYQQLLRDLVQHTNVAVLATSIPVTIRQSPLQHVAL
ARTVQRQFRTAWRDVLLDEYGEDVRHVPVCGVGHSLGARLLVVLATLPPD
TRPTKAWRPPPYQSYILISFTNYGAAAGIPGIYQLGKASRKVARNEWYDE
DEDEDWGELVEELQSALRDQAAKVQSALTPKSTDLEFFPTPEQLWKALQE
DHRYTIPQTLVVQFDDDDIDQSSKLALAIHSPERASLVRFARLRGTHLTP
VSVRDDSQPDGYGSRAWWKQLNSSASRILGKLLASRRQRRPNGEALRELR
QSMARYITEIVTK
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MYLGDSGQCQGWSPSRNLPARTRRIARRPWCFSARNPPLPLGNLASSRRD
VGNEQFYNGDDDNTDFYNERASRKSRLDDSSPYWSNDADNEFHDKAQSSS
GGFYNVHFDNRNGDAAAAPEPLAWERCATDAGVVQVLLPPASVALPTAVL
HFVGGTLFGSAPSVWYQQLLRDLVQHTNVAVLATSIPVTIRQSPLQHVAL
ARTVQRQFRTAWRDVLLDEYGEDVRHVPVCGVGHSLGARLLVVLATLPPD
TRPTKAWRPPPYQSYILISFTNYGAAAGIPGIYQLGKASRKVARNEWYDE
DEDEDWGELVEELQSALRDQAAKVQSALTPKSTDLEFFPTPEQLWKALQE
DHRYTIPQTLVVQFDDDDIDQSSKLALAIHSPERASLVRFARLRGTHLTP
VSVRDDSQPDGYGSRAWWKQLNSSASRILGKLLASRRQRRPNGEALRELR
QSMARYITEIVTK


Reference
    Title: The Phaeodactylum genome reveals the evolutionary history of diatom genomes
    Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F and Grigoriev IV <67 more author(s)>
    Ref: Nature, 456:239, 2008 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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