Gene_locus Report for: phypa-a9slp7 Physcomitrella patens subsp. patens (Moss) PpKAI2-like I Predicted protein
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Bryophyta: N E > Bryophytina: N E > Bryopsida: N E > Funariidae: N E > Funariales: N E > Funariaceae: N E > Physcomitrella: N E > Physcomitrella patens: N E 6_AlphaBeta_hydrolase :
phypa-a9tds0 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9tja4 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9u0p4 Physcomitrella patens subsp. patens (Moss) Predicted protein .
A85-EsteraseD-FGH :
phypa-a9san7 Physcomitrella patens subsp. patens (Moss) Predicted protein .
ABHD13-BEM46 :
phypa-a9sqk3 Physcomitrella patens subsp. patens (Moss). Predicted protein .
ABHD18 :
phypa-a9tyr8 Physcomitrella patens subsp. patens Predicted protein .
abh_upf0017 :
phypa-a9rfh1 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9t5h1 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9tin6 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9tsv6 Physcomitrella patens subsp. patens (Moss) Predicted protein .
Acidic_Lipase :
phypa-a9rns2 Physcomitrella patens subsp. patens (Moss) Lipase ,
phypa-a9rp52 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9ry17 Physcomitrella patens subsp. patens (Moss) Lipase ,
phypa-a9ssb0 Physcomitrella patens subsp. patens (Moss) Lipase ,
phypa-a9t8u8 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9te64 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9tfw2 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9tu05 Physcomitrella patens subsp. patens (Moss) Predicted protein .
BD-FAE :
phypa-a9sx74 Physcomitrella patens subsp. patens Predicted protein .
CGI-58_ABHD5_ABHD4 :
phypa-a9sl58 Physcomitrella patens subsp. patens (Moss) Predicted protein .
DPP4N_Peptidase_S9 :
phypa-a9rgt9 Physcomitrella patens subsp. patens (Moss) Predicted protein .
Duf_1350 :
phypa-a9t0p4 Physcomitrella patens subsp. patens Predicted protein ,
phypa-a9u0k3 Physcomitrella patens subsp. patens Predicted protein .
Epoxide_hydrolase :
phypa-a9rhz9 Physcomitrella patens subsp. patens (Moss) Predicted protein .
Fusarinine_C_esterase_sidJ :
phypa-a9t9c9 Physcomitrella patens subsp. patens (Moss) Predicted protein .
Glutamyl_Peptidase_S9 :
phypa-a0a2k1ie71 Physcomitrella patens subsp. patens (Moss). Peptidase_S9 domain-containing protein ,
phypa-a0a2k1kg29 Physcomitrella patens subsp. patens (Moss). Peptidase_S9 domain-containing protein ,
phypa-a0a2k1iji3 Physcomitrella patens subsp. patens (Moss). Peptidase_S9 domain-containing protein .
Hydroxynitrile_lyase :
phypa-a9ry72 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9s8c7 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9sc75 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9se75 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9sse1 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9t7g6 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9tmp3 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9tr83 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9u0c9 Physcomitrella patens subsp. patens (Moss) Predicted protein .
LIDHydrolase :
phypa-a9s6w1 Physcomitrella patens subsp. patens Predicted protein .
Maspardin-ACP33-SPG21_like :
phypa-a9rkj1 Physcomitrella patens subsp. patens (Moss) Predicted protein .
Monoglyceridelipase_lysophospholip :
phypa-a9rg19 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9rq03 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9skr1 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9skw1 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9sp13 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9t0n4 Physcomitrella patens subsp. patens (Moss) Predicted protein .
Ndr_family :
phypa-a9tfm7 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9tfp6 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9syg9 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9tzk2 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9tvg4 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9t1y4 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9tqt6 Physcomitrella patens subsp. patens (Moss) Predicted protein .
NLS3-Tex30 :
phypa-a9t498 Physcomitrella patens subsp. patens (Moss) Predicted protein .
Pectinacetylesterase-Notum :
phypa-a9sy58 Physcomitrella patens subsp. patens (Moss) Predicted protein .
Pheophytinase :
phypa-a9s5n8 Physcomitrella patens subsp. patens (Moss) Predicted protein .
PhoPQ_related :
phypa-a9tmr4 Physcomitrella patens subsp. patens (Moss) Predicted protein .
PMH_Peptidase_S9 :
phypa-a9syy4 Physcomitrella patens subsp. patens (Moss) Predicted protein .
PPase_methylesterase_euk :
phypa-a9u2u7 Physcomitrella patens subsp. patens (Moss) Protein phosphatase methylesterase 1 .
Proline_iminopeptidase :
phypa-a9st18 Physcomitrella patens subsp. patens (Moss). Proline iminopeptidase ,
phypa-a9tix9 Physcomitrella patens subsp. patens (Moss). Predicted protein .
Prolylcarboxypeptidase :
phypa-a9tbu4 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9u3s0 Physcomitrella patens subsp. patens (Moss) Predicted protein .
RsbQ-like :
phypa-a9s299 Physcomitrella patens subsp. patens (Moss) PpKAI2-like K Predicted protein ,
phypa-a9sg07 ,
phypa-a9skf7 ,
phypa-a9smq5 Physcomitrella patens subsp. patens (Moss) PpKAI2-like F Predicted protein ,
phypa-a9ssf6 Physcomitrella patens subsp. patens (Moss) PpKAI2-like D Predicted protein ,
phypa-a9st85 ,
phypa-a9t1j2 Physcomitrella patens subsp. patens (Moss) PpKAI2-like B Predicted protein ,
phypa-a9t9d9 Physcomitrella patens subsp. patens (Moss) PpKAI2-like G Predicted protein ,
phypa-a0a7i4d2t7 Physcomitrella patens subsp. patens (Moss) PpKAI2-like M Predicted protein ,
phypa-a9tc36 Physcomitrella patens subsp. patens (Moss) PpKAI2-like L Predicted protein ,
phypa-a9tql4 Physcomitrella patens subsp. patens (Moss) PpKAI2-like J Predicted protein ,
phypa-a9tw81 Physcomitrella patens subsp. patens (Moss) PpKAI2-like A Predicted protein .
S9N_PREPL_Peptidase_S9 :
phypa-a9rbi6 Physcomitrella patens subsp. patens (Moss) Predicted protein ,
phypa-a9tsl1 Physcomitrella patens subsp. patens (Moss) Predicted protein .
UCP031088 :
phypa-a0a2k1kfe3 Physcomitrella patens subsp. patens (Moss). Uncharacterized protein Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can
retrieve all strain data
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Physcomitrella patens:
N ,
E .
Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: phypa-a9slp7 Colored MSA for RsbQ-like (raw)
MVISKAFLSSHNVRDLGNGDQVVVLGHGFGSDQSMWRYIVPSLLSNNLKI
VLFDIMGAGTTDPEHFSSKSYSSLQAHADDLLAVLRELDIVSCVYVGHSM
SGMIGCLASIQRPEIFRKLILLATSPRYLNDRNYYGGFEQHDLDQLFANI
KFDFKSWVSVFAPGAVGGDIDDKAVQEFFRTLLSMRPDIVLSTSKTIFQS
DLRSILPEARKLQSCKSVYIVTVPCHIIQSRKDLAVPVEVAEYLSRNLGG
WTSMEILQTEGHIPQLSSPELVIPVLLRCIDA
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M V I S K A F L S S H N V R D L G N G D Q V V V L G H G F G S D Q S M W R Y I V P S L L S N N L K I V L F D I M G A G T T D P E H F S S K S Y S S L Q A H A D D L L A V L R E L D I V S C V Y V G H S M S G M I G C L A S I Q R P E I F R K L I L L A T S P R Y L N D R N Y Y G G F E Q H D L D Q L F A N I K F D F K S W V S V F A P G A V G G D I D D K A V Q E F F R T L L S M R P D I V L S T S K T I F Q S D L R S I L P E A R K L Q S C K S V Y I V T V P C H I I Q S R K D L A V P V E V A E Y L S R N L G G W T S M E I L Q T E G H I P Q L S S P E L V I P V L L R C I D A
References
Title: The Physcomitrium (Physcomitrella) patens PpKAI2L receptors for strigolactones and related compounds function via MAX2-dependent and independent pathwaysLopez-Obando M , Guillory A , Boyer FD , Cornu D , Hoffmann B , Le Bris P , Pouvreau JB , Delavault P , Rameau C and Bonhomme S <1 more author(s)> Lopez-Obando M , Guillory A , Boyer FD , Cornu D , Hoffmann B , Le Bris P , Pouvreau JB , Delavault P , Rameau C , de Saint Germain A , Bonhomme S (- 1) Ref: Plant Cell, PubMed Abstract ESTHER: Lopez-Obando_2021_Plant.Cell__ PubMedSearch: Lopez-Obando 2021 Plant.Cell PubMedID: 34459915 Gene_locus related to this paper: phypa-a9s299 ,
phypa-a9sg07 ,
phypa-a9skf7 ,
phypa-a9slp7 ,
phypa-a9smq5 ,
phypa-a9ssf6 ,
phypa-a9st85 ,
phypa-a9t1j2 ,
phypa-a9t9d9 ,
phypa-a0a7i4d2t7 ,
phypa-a9tc36 ,
phypa-a9tql4 ,
phypa-a9tw81 Abstract
In angiosperms, the alpha/beta hydrolase DWARF14 (D14), along with the F-box protein MORE AXILLARY GROWTH2 (MAX2), perceives strigolactones (SL) to regulate developmental processes. The key SL biosynthetic enzyme CAROTENOID CLEAVAGE DIOXYGENASE8 (CCD8) is present in the moss Physcomitrium patens, and PpCCD8-derived compounds regulate moss extension. The PpMAX2 homolog is not involved in the SL response, but 13 PpKAI2LIKE (PpKAI2L) genes homologous to the D14 ancestral paralog KARRIKIN INSENSITIVE2 (KAI2) encode candidate SL receptors. In Arabidopsis thaliana, AtKAI2 perceives karrikins and the elusive endogenous KAI2-Ligand (KL). Here, germination assays of the parasitic plant Phelipanche ramosa suggested that PpCCD8-derived compounds are likely non-canonical SLs. (+)-GR24 SL analog is a good mimic for PpCCD8-derived compounds in P. patens, while the effects of its enantiomer (-)-GR24, a KL mimic in angiosperms, are minimal. Interaction and binding assays of seven PpKAI2L proteins pointed to the stereoselectivity towards (-)-GR24 for a single clade of PpKAI2L (eu-KAI2). Enzyme assays highlighted the peculiar behavior of PpKAI2L-H. Phenotypic characterization of Ppkai2l mutants showed that eu-KAI2 genes are not involved in the perception of PpCCD8-derived compounds but act in a PpMAX2-dependent pathway. By contrast, mutations in PpKAI2L-G, and -J genes abolished the response to the (+)-GR24 enantiomer, suggesting that PpKAI2L-G, and -J proteins are receptors for moss SLs.
Published as a preprint Lopez-Obando_2020_Biorxiv__
Title: The Physcomitrella genome reveals evolutionary insights into the conquest of land by plantsRensing SA , Lang D , Zimmer AD , Terry A , Salamov A , Shapiro H , Nishiyama T , Perroud PF , Lindquist EA and Boore JL <60 more author(s)> Rensing SA , Lang D , Zimmer AD , Terry A , Salamov A , Shapiro H , Nishiyama T , Perroud PF , Lindquist EA , Kamisugi Y , Tanahashi T , Sakakibara K , Fujita T , Oishi K , Shin IT , Kuroki Y , Toyoda A , Suzuki Y , Hashimoto S , Yamaguchi K , Sugano S , Kohara Y , Fujiyama A , Anterola A , Aoki S , Ashton N , Barbazuk WB , Barker E , Bennetzen JL , Blankenship R , Cho SH , Dutcher SK , Estelle M , Fawcett JA , Gundlach H , Hanada K , Heyl A , Hicks KA , Hughes J , Lohr M , Mayer K , Melkozernov A , Murata T , Nelson DR , Pils B , Prigge M , Reiss B , Renner T , Rombauts S , Rushton PJ , Sanderfoot A , Schween G , Shiu SH , Stueber K , Theodoulou FL , Tu H , Van de Peer Y , Verrier PJ , Waters E , Wood A , Yang L , Cove D , Cuming AC , Hasebe M , Lucas S , Mishler BD , Reski R , Grigoriev IV , Quatrano RS , Boore JL (- 60) Ref: Science, 319 :64, 2008 : PubMed Abstract ESTHER: Rensing_2008_Science_319_64 PubMedSearch: Rensing 2008 Science 319 64 PubMedID: 18079367 Gene_locus related to this paper: phypa-a9rbi6 ,
phypa-a9rfh1 ,
phypa-a9rg19 ,
phypa-a9rgt9 ,
phypa-a9rhz9 ,
phypa-a9rkj1 ,
phypa-a9rns2 ,
phypa-a9rp52 ,
phypa-a9rq03 ,
phypa-a9ry17 ,
phypa-a9ry72 ,
phypa-a9s5n8 ,
phypa-a9s6w1 ,
phypa-a9s8c7 ,
phypa-a9s299 ,
phypa-a9san7 ,
phypa-a9sc75 ,
phypa-a9se75 ,
phypa-a9sg07 ,
phypa-a9skf7 ,
phypa-a9skr1 ,
phypa-a9skw1 ,
phypa-a9sl58 ,
phypa-a9slp7 ,
phypa-a9smq5 ,
phypa-a9sp13 ,
phypa-a9ssb0 ,
phypa-a9sse1 ,
phypa-a9ssf6 ,
phypa-a9st85 ,
phypa-a9sx74 ,
phypa-a9sy58 ,
phypa-a9syy4 ,
phypa-a9t0n4 ,
phypa-a9t0p4 ,
phypa-a9t1j2 ,
phypa-a9t5h1 ,
phypa-a9t7g6 ,
phypa-a9t8u8 ,
phypa-a9t9c9 ,
phypa-a9t9d9 ,
phypa-a0a7i4d2t7 ,
phypa-a9t498 ,
phypa-a9tbu4 ,
phypa-a9tc36 ,
phypa-a9tds0 ,
phypa-a9te64 ,
phypa-a9tfw2 ,
phypa-a9tin6 ,
phypa-a9tja4 ,
phypa-a9tmp3 ,
phypa-a9tmr4 ,
phypa-a9tql4 ,
phypa-a9tr83 ,
phypa-a9tsl1 ,
phypa-a9tsv6 ,
phypa-a9tu05 ,
phypa-a9tw81 ,
phypa-a9tyr8 ,
phypa-a9u0c9 ,
phypa-a9u0k3 ,
phypa-a9u0p4 ,
phypa-a9u2u7 ,
phypa-a9u3s0 ,
phypa-a9tfm7 ,
phypa-a9tfp6 ,
phypa-a9syg9 ,
phypa-a9tzk2 ,
phypa-a9tvg4 ,
phypa-a9t1y4 ,
phypa-a9tqt6 ,
phypa-a9st18 ,
phypa-a9tix9 ,
phypa-a0a2k1kfe3 ,
phypa-a9sqk3 ,
phypa-a0a2k1ie71 ,
phypa-a0a2k1kg29 ,
phypa-a0a2k1iji3 Abstract
We report the draft genome sequence of the model moss Physcomitrella patens and compare its features with those of flowering plants, from which it is separated by more than 400 million years, and unicellular aquatic algae. This comparison reveals genomic changes concomitant with the evolutionary movement to land, including a general increase in gene family complexity; loss of genes associated with aquatic environments (e.g., flagellar arms); acquisition of genes for tolerating terrestrial stresses (e.g., variation in temperature and water availability); and the development of the auxin and abscisic acid signaling pathways for coordinating multicellular growth and dehydration response. The Physcomitrella genome provides a resource for phylogenetic inferences about gene function and for experimental analysis of plant processes through this plant's unique facility for reverse genetics.
Other Papers
Physcomitrella patens subsp. patens (Moss) PpKAI2-like H Predicted protein