Gene_locus Report for: podan-b2a9c4 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Predicted CDS Pa_1_780
Comment
n-term 50 low complexity deleted here Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Fungi: N E > Dikarya: N E > Ascomycota: N E > saccharomyceta: N E > Pezizomycotina: N E > leotiomyceta: N E > sordariomyceta: N E > Sordariomycetes: N E > Sordariomycetidae: N E > Sordariales: N E > Lasiosphaeriaceae: N E > Podospora: N E > Podospora anserina: N E 6_AlphaBeta_hydrolase :
podan-b2akq7 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Predicted CDS Pa_5_8200 ,
podan-b2au46 Podospora anserina (strain S / DSM 980 / FGSC 10383) (Pleuraga anserina) Predicted CDS Pa_1_17940 ,
podan-b2b1p7 Podospora anserina (strain S / DSM 980 / FGSC 10383) (Pleuraga anserina) Predicted CDS Pa_6_4030 ,
podan-b2b395 Podospora anserina (strain S / DSM 980 / FGSC 10383) (Pleuraga anserina) Predicted CDS Pa_6_670 .
A85-EsteraseD-FGH :
podan-b2axk2 Podospora anserina Predicted CDS Pa_7_10850 .
A85-Feruloyl-Esterase :
podan-b2apj6 Podospora anserina Predicted CDS Pa_5_11240 .
A85-IroE-IroD-Fes-Yiel :
podan-b2ack2 Podospora anserina Predicted CDS Pa_3_1250 ,
podan-b2adk0 Podospora anserina Predicted CDS Pa_4_1300 ,
podan-b2b6n7 Podospora anserina Predicted CDS Pa_2_8330 .
ABHD11-Acetyl_transferase :
podan-a0a090ccl8 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina). Uncharacterized protein ,
podan-b2b5p4 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina). Podospora anserina S mat+ genomic DNA chromosome 2, supercontig 2 .
Acetylxylan_esterase :
podan-b2afr0 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Podospora anserina S mat+ genomic DNA chromosome 5, supercontig 7 ,
podan-b2aca3 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Podospora anserina S mat+ genomic DNA chromosome 3, supercontig 1 ,
podan-b2arv3 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Podospora anserina S mat+ genomic DNA chromosome 1, supercontig 6 ,
podan-b2ax54 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Podospora anserina S mat+ genomic DNA chromosome 7, supercontig 1 .
Acidic_Lipase :
podan-b2aun9 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Predicted CDS Pa_1_19760 ,
podan-b2axz2 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Predicted CDS Pa_1_9320 .
AlphaBeta_hydrolase :
podan-Q875E1 Podospora anserina (Pleurage anserina) hypothetical protein pa5g0031 .
Arb2_domain :
podan-b2azp1 Podospora anserina (Pleurage anserina); Podospora comata. Putative Histone deacetylase A Arb2 domain .
Bacterial_esterase :
podan-Q875D3 Podospora anserina hypothetical protein pa5g0015 .
Carboxypeptidase_S10 :
podan-b2ank1 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Podospora anserina S mat+ genomic DNA chromosome 6, supercontig 4 ,
podan-kex1 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina). Carboxypeptidase D ,
podan-cbpya Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina). Carboxypeptidase Y homolog A .
CGI-58_ABHD5_ABHD4 :
podan-b2ase4 Podospora anserina (strain S / DSM 980 / FGSC 10383) (Pleuraga anserina) Predicted CDS Pa_1_23240 .
Cutinase :
podan-b2a9k8 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Podospora anserina S mat+ genomic DNA chromosome 1, supercontig 1 ,
podan-b2atb3 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Podospora anserina S mat+ genomic DNA chromosome 1, supercontig 4 ,
podan-b2ank5 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Podospora anserina S mat+ genomic DNA chromosome 6, supercontig 4 .
DPP4N_Peptidase_S9 :
podan-b2ad07 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Predicted CDS Pa_3_10810 ,
podan-dapb Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Probable dipeptidyl-aminopeptidase B .
Duf_726 :
podan-b2aa90 Podospora anserina Predicted CDS Pa_1_3250 ,
podan-b2am11 Podospora anserina Predicted CDS Pa_1_13500 ,
podan-b2b069 Podospora anserina Predicted CDS Pa_3_6500 .
Epoxide_hydrolase :
podan-b2apa8 Podospora anserina (strain S / DSM 980 / FGSC 10383) (Pleuraga anserina) Predicted CDS Pa_7_40 ,
podan-b2ava6 Podospora anserina (strain S / DSM 980 / FGSC 10383) (Pleuraga anserina) Predicted CDS Pa_7_3580 ,
podan-b2avu5 Podospora anserina (strain S / DSM 980 / FGSC 10383) (Pleuraga anserina) Predicted CDS Pa_7_1770 .
FaeC :
podan-b2af75 Podospora anserina (Pleurage anserina); Podospora comata. Putative Carbohydrate Esterase Family 1 ,
podan-b2alm5 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina). Feruloyl esterase ,
podan-b2ass5 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina). Feruloyl esterase ,
podan-b2aez8 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina). Feruloyl esterase .
Fungal_carboxylesterase_lipase :
podan-b2ab33 Podospora anserina Predicted CDS Pa_1_6000 ,
podan-b2aee7 Podospora anserina Predicted CDS Pa_5_2830 ,
podan-b2af51 Podospora anserina Predicted CDS Pa_5_510 ,
podan-b2afu6 Podospora anserina Predicted CDS Pa_0_110 ,
podan-b2aly0 Podospora anserina Predicted CDS Pa_1_13190 ,
podan-b2an24 Podospora anserina Predicted CDS Pa_6_8760 ,
podan-b2arl9 Podospora anserina (Pleurage anserina) Predicted CDS Pa_4_7080 ,
podan-b2arz7 Podospora anserina Predicted CDS Pa_1_21820 ,
podan-b2awk8 Podospora anserina Predicted CDS Pa_7_7500 ,
podan-b2b073 Podospora anserina Predicted CDS Pa_3_8160 ,
podan-a0a090d4h4 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina). Putative esterase lipase .
Fusarinine_C_esterase_sidJ :
podan-b2a9k6 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Predicted CDS Pa_1_80 ,
podan-b2avx3 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Predicted CDS Pa_7_5190 .
Glucuronoyl_esterase :
podan-b2abs0 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Predicted CDS Pa_0_910 ,
podan-b2api8 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Predicted CDS Pa_5_11620 .
Haloperoxidase :
podan-b2av47 Podospora anserina (strain S / DSM 980 / FGSC 10383) (Pleuraga anserina) Predicted CDS Pa_7_4110 .
Hormone-sensitive_lipase_like :
podan-Q875F7 Podospora anserina hypothetical protein pa5g0052 .
Kynurenine-formamidase :
podan-b2b164 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina). N-formylkynurenine formamidase .
LIDHydrolase :
podan-b2b5e4 Podospora anserina Predicted CDS Pa_2_4420 .
PC-sterol_acyltransferase :
podan-Q875A3 Podospora anserina hypothetical protein pa5d0027 .
PGAP1 :
podan-b2ae59 Podospora anserina (strain S / DSM 980 / FGSC 10383) (Pleuraga anserina) Predicted CDS Pa_4_2940 ,
podan-b2afn5 Podospora anserina (strain S / DSM 980 / FGSC 10383) (Pleuraga anserina) Predicted CDS Pa_5_12100 .
PPase_methylesterase_euk :
podan-b2a8u1 Podospora anserina (strain S / DSM 980 / FGSC 10383) (Pleuraga anserina) Protein phosphatase methylesterase 1 .
Proline_iminopeptidase :
podan-b2ad56 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina). Podospora anserina S mat+ genomic DNA chromosome 4, supercontig 1 ,
podan-b2anm1 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina). Podospora anserina S mat+ genomic DNA chromosome 6, supercontig 4 ,
podan-b2aya1 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina). Podospora anserina S mat+ genomic DNA chromosome 1, supercontig 2 .
Prolylcarboxypeptidase :
podan-b2ac17 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Predicted CDS Pa_2_13780 ,
podan-b2adj6 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Predicted CDS Pa_4_1260 ,
podan-b2atn0 Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) Predicted CDS Pa_1_16420 .
Steryl_acetyl_hydrolase :
podan-b2avm3 Podospora anserina Predicted CDS Pa_7_2450 Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: podan-b2a9c4 Colored MSA for Glucuronoyl_esterase (raw)
SLPDPFLPLKYTTTDNAAGSSTFARDVMTGNAPNRIRSRAEWYQCRQPEI
LQFLQEYQFGYYPDPTQEKVEATRSGTTLQITVTGPQNKRGSFRATIQLP
SGASSSRPAPVVINIGGMQNQPYLQAGIAVAQFDYTTVAPDSNSKTGVFW
SIYNGRDIGVLTAWAWGFHRTLDAIQLTVPEIDPYRVGVTGCSRLGKAAL
VAGLFDKRITVTMPMSSGVQGLGPYRYFTLSGQGENLENSKQGAGWWSNS
KLGSFMNHHENLPFDAHTIAAAIAPRALIIDQGTGDQFVNSKGTATVIFP
AAKVVYDWLGAGDKIGINVRSGGHCDMSGLYVFRMPDQFVWTEMLTEAVT
GSCPLCKRSFSTPPPPETFTAWAPTTHPWPHRTLGQLPFRRRRLGNSR
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
S L P D P F L P L K Y T T T D N A A G S S T F A R D V M T G N A P N R I R S R A E W Y Q C R Q P E I L Q F L Q E Y Q F G Y Y P D P T Q E K V E A T R S G T T L Q I T V T G P Q N K R G S F R A T I Q L P S G A S S S R P A P V V I N I G G M Q N Q P Y L Q A G I A V A Q F D Y T T V A P D S N S K T G V F W S I Y N G R D I G V L T A W A W G F H R T L D A I Q L T V P E I D P Y R V G V T G C S R L G K A A L V A G L F D K R I T V T M P M S S G V Q G L G P Y R Y F T L S G Q G E N L E N S K Q G A G W W S N S K L G S F M N H H E N L P F D A H T I A A A I A P R A L I I D Q G T G D Q F V N S K G T A T V I F P A A K V V Y D W L G A G D K I G I N V R S G G H C D M S G L Y V F R M P D Q F V W T E M L T E A V T G S C P L C K R S F S T P P P P E T F T A W A P T T H P W P H R T L G Q L P F R R R R L G N S R
Reference
Title: The genome sequence of the model ascomycete fungus Podospora anserinaEspagne E , Lespinet O , Malagnac F , Da Silva C , Jaillon O , Porcel BM , Couloux A , Aury JM , Segurens B and Silar P <25 more author(s)> Espagne E , Lespinet O , Malagnac F , Da Silva C , Jaillon O , Porcel BM , Couloux A , Aury JM , Segurens B , Poulain J , Anthouard V , Grossetete S , Khalili H , Coppin E , Dequard-Chablat M , Picard M , Contamine V , Arnaise S , Bourdais A , Berteaux-Lecellier V , Gautheret D , de Vries RP , Battaglia E , Coutinho PM , Danchin EG , Henrissat B , Khoury RE , Sainsard-Chanet A , Boivin A , Pinan-Lucarre B , Sellem CH , Debuchy R , Wincker P , Weissenbach J , Silar P (- 25) Ref: Genome Biol, 9 :R77, 2008 : PubMed Abstract ESTHER: Espagne_2008_Genome.Biol_9_R77 PubMedSearch: Espagne 2008 Genome.Biol 9 R77 PubMedID: 18460219 Gene_locus related to this paper: podan-b2a8u1 ,
podan-b2a9c4 ,
podan-b2a9k6 ,
podan-b2aa90 ,
podan-b2ab33 ,
podan-b2abs0 ,
podan-b2ac17 ,
podan-b2ack2 ,
podan-b2ad07 ,
podan-b2adj6 ,
podan-b2adk0 ,
podan-b2ae59 ,
podan-b2aee7 ,
podan-b2af51 ,
podan-b2afn5 ,
podan-b2afu6 ,
podan-b2akq7 ,
podan-b2aly0 ,
podan-b2am11 ,
podan-b2an24 ,
podan-b2ank1 ,
podan-b2apa8 ,
podan-b2api8 ,
podan-b2apj6 ,
podan-b2arl9 ,
podan-b2arz7 ,
podan-b2ase4 ,
podan-b2atn0 ,
podan-b2au46 ,
podan-b2aun9 ,
podan-b2av47 ,
podan-b2ava6 ,
podan-b2avm3 ,
podan-b2avu5 ,
podan-b2avx3 ,
podan-b2awk8 ,
podan-b2axk2 ,
podan-b2axz2 ,
podan-b2b1p7 ,
podan-b2b5e4 ,
podan-b2b6n7 ,
podan-b2b069 ,
podan-b2b073 ,
podan-b2b395 ,
podan-dapb ,
podan-b2afr0 ,
podan-b2a9k8 ,
podan-b2atb3 ,
podan-b2aca3 ,
podan-b2arv3 ,
podan-b2ank5 ,
podan-b2ax54 ,
podan-b2ad56 ,
podan-b2anm1 ,
podan-b2aya1 ,
podan-b2b164 ,
podan-a0a090d4h4 ,
podan-a0a090ccl8 ,
podan-b2b5p4 ,
podan-b2azp1 ,
podan-b2af75 ,
podan-b2alm5 ,
podan-b2ass5 ,
podan-b2aez8 ,
podan-kex1 ,
podan-cbpya Abstract
BACKGROUND: The dung-inhabiting ascomycete fungus Podospora anserina is a model used to study various aspects of eukaryotic and fungal biology, such as ageing, prions and sexual development. RESULTS: We present a 10X draft sequence of P. anserina genome, linked to the sequences of a large expressed sequence tag collection. Similar to higher eukaryotes, the P. anserina transcription/splicing machinery generates numerous non-conventional transcripts. Comparison of the P. anserina genome and orthologous gene set with the one of its close relatives, Neurospora crassa, shows that synteny is poorly conserved, the main result of evolution being gene shuffling in the same chromosome. The P. anserina genome contains fewer repeated sequences and has evolved new genes by duplication since its separation from N. crassa, despite the presence of the repeat induced point mutation mechanism that mutates duplicated sequences. We also provide evidence that frequent gene loss took place in the lineages leading to P. anserina and N. crassa. P. anserina contains a large and highly specialized set of genes involved in utilization of natural carbon sources commonly found in its natural biotope. It includes genes potentially involved in lignin degradation and efficient cellulose breakdown. CONCLUSION: The features of the P. anserina genome indicate a highly dynamic evolution since the divergence of P. anserina and N. crassa, leading to the ability of the former to use specific complex carbon sources that match its needs in its natural biotope.
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