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Gene_locus Report for: pseht-q3ifd8

Pseudoalteromonas haloplanktis (strain TAC 125) Putative uncharacterized protein

Relationship
Family|Duf_3530
Block| X
Position in NCBI Life Tree|Pseudoalteromonas haloplanktis
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Alteromonadales: N E > Pseudoalteromonadaceae: N E > Pseudoalteromonas: N E > Pseudoalteromonas haloplanktis: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : CR954246
1 UniProt : Q3IFD8
1 UniProt : Q3IFD8
1 Interpro : Q3IFD8
1 Pfam : Q3IFD8
1 PIRSF : Q3IFD8
1 SUPERFAM : Q3IFD8
Sequence
Graphical view for this peptide sequence: pseht-q3ifd8
Colored MSA for Duf_3530 (raw)
MVLAQYLKVIKLNVLLSCALILTVQVTAAEHIAPPSYASIENNDIQHLLP
NDEIKPILAGDTEFLTLYSEYMSADFRGTVLLIPDWQSSATNNAGMSFLR
KELNNLGYTTYAMTVPDINWQASEVATAATNENTATESTSAENILAQSSD
NAHTANQSTDNESAAVESATIEDTGVNKSAEPHHVNAIEKVSDAVLDNYK
VNLIARYEALYNTAMAEPNNIVVIAQGISAGVLLEHYAQFPDSRLNAFIS
LSSYLPNSKRNQDLSQTSSLIAPPLLDIYYANDNNEILMNLKNRQRWVNR
NAKFDYRQRQLFGLRNQPDQHARLSKEIDGFLRRLF
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MVLAQYLKVIKLNVLLSCALILTVQVTAAEHIAPPSYASIENNDIQHLLP
NDEIKPILAGDTEFLTLYSEYMSADFRGTVLLIPDWQSSATNNAGMSFLR
KELNNLGYTTYAMTVPDINWQASEVATAATNENTATESTSAENILAQSSD
NAHTANQSTDNESAAVESATIEDTGVNKSAEPHHVNAIEKVSDAVLDNYK
VNLIARYEALYNTAMAEPNNIVVIAQGISAGVLLEHYAQFPDSRLNAFIS
LSSYLPNSKRNQDLSQTSSLIAPPLLDIYYANDNNEILMNLKNRQRWVNR
NAKFDYRQRQLFGLRNQPDQHARLSKEIDGFLRRLF


Reference
    Title: Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125
    Medigue C, Krin E, Pascal G, Barbe V, Bernsel A, Bertin PN, Cheung F, Cruveiller S, D'Amico S and Danchin A <14 more author(s)>
    Ref: Genome Res, 15:1325, 2005 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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